Version 1.4.0

2 files changed, 75 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..ac5d20fdac65
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,25 @@
+pkgbase = r-vsclust
+	pkgdesc = Feature-based variance-sensitive quantitative clustering
+	pkgver = 1.4.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/vsclust
+	arch = x86_64
+	license = GPL2
+	checkdepends = r-testthat
+	makedepends = r-rcpp
+	depends = r-limma
+	depends = r-matrixstats
+	depends = r-multiassayexperiment
+	depends = r-qvalue
+	depends = r-shiny
+	optdepends = r-biocstyle
+	optdepends = r-clusterprofiler
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	optdepends = r-yaml
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/vsclust_1.4.0.tar.gz
+	md5sums = 0c492a6d65d0b230211a0f95706b51a4
+	sha256sums = 3438992407e27098a9304721bbb07d30fb85d3c238bdda0d96a5cca9d0e9748d
+
+pkgname = r-vsclust
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..b7b9e53980c1
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,50 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=vsclust
+_pkgver=1.4.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Feature-based variance-sensitive quantitative clustering"
+arch=(x86_64)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(GPL2)
+depends=(
+  r-limma
+  r-matrixstats
+  r-multiassayexperiment
+  r-qvalue
+  r-shiny
+)
+makedepends=(
+  r-rcpp
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-clusterprofiler
+  r-knitr
+  r-rmarkdown
+  r-testthat
+  r-yaml
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('0c492a6d65d0b230211a0f95706b51a4')
+sha256sums=('3438992407e27098a9304721bbb07d30fb85d3c238bdda0d96a5cca9d0e9748d')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}