diff options
| author | Sukanka | 2022-06-07 02:44:59 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-07 02:44:59 +0800 |
| commit | 43266345c0828e262f238b4b3b3b2d14a04b69a3 (patch) | |
| tree | e5ef49be9d5082420397d714cf0455c6324c76ce | |
| download | aur-43266345c0828e262f238b4b3b3b2d14a04b69a3.tar.gz | |
add r-vulcan
| -rw-r--r-- | .SRCINFO | 27 | ||||
| -rw-r--r-- | PKGBUILD | 43 |
2 files changed, 70 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..70f87e299476 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,27 @@ +pkgbase = r-vulcan + pkgdesc = VirtUaL ChIP-Seq data Analysis using Networks + pkgver = 1.18.0 + pkgrel = 1 + url = https://bioconductor.org/packages/vulcan + arch = any + license = LGPL + depends = r + depends = r-biobase + depends = r-catools + depends = r-chippeakanno + depends = r-csaw + depends = r-deseq2 + depends = r-diffbind + depends = r-genomicranges + depends = r-gplots + depends = r-locfit + depends = r-s4vectors + depends = r-txdb.hsapiens.ucsc.hg19.knowngene + depends = r-viper + depends = r-wordcloud + depends = r-zoo + optdepends = r-vulcandata + source = https://bioconductor.org/packages/release/bioc/src/contrib/vulcan_1.18.0.tar.gz + sha256sums = 5c388c810df921125c0fad9ce5b196a3dea1baff739a338f026fd850afaf2f39 + +pkgname = r-vulcan diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..f85d2abf1504 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,43 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=vulcan +_pkgver=1.18.0 +pkgname=r-${_pkgname,,} +pkgver=1.18.0 +pkgrel=1 +pkgdesc='VirtUaL ChIP-Seq data Analysis using Networks' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('LGPL') +depends=( + r + r-biobase + r-catools + r-chippeakanno + r-csaw + r-deseq2 + r-diffbind + r-genomicranges + r-gplots + r-locfit + r-s4vectors + r-txdb.hsapiens.ucsc.hg19.knowngene + r-viper + r-wordcloud + r-zoo +) +optdepends=( + r-vulcandata +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('5c388c810df921125c0fad9ce5b196a3dea1baff739a338f026fd850afaf2f39') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |