add r-watermelon

2 files changed, 78 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..3a98b94ed315
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,31 @@
+pkgbase = r-watermelon
+	pkgdesc = Illumina 450 and EPIC methylation array normalization and metrics
+	pkgver = 2.2.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/wateRmelon
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-biobase
+	depends = r-illuminahumanmethylation450kanno.ilmn12.hg19
+	depends = r-illuminaio
+	depends = r-limma
+	depends = r-lumi
+	depends = r-matrixstats
+	depends = r-methylumi
+	depends = r-roc
+	optdepends = r-biocstyle
+	optdepends = r-flowsorted.blood.450k
+	optdepends = r-flowsorted.blood.epic
+	optdepends = r-illuminahumanmethylationepicanno.ilm10b2.hg19
+	optdepends = r-illuminahumanmethylationepicmanifest
+	optdepends = r-irlba
+	optdepends = r-knitr
+	optdepends = r-minfi
+	optdepends = r-preprocesscore
+	optdepends = r-rmarkdown
+	optdepends = r-rpmm
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/wateRmelon_2.2.0.tar.gz
+	sha256sums = fb92984b6eafe8bc56849e1520961749dec7285e195c5e8754ccedbc94f3b829
+
+pkgname = r-watermelon
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..0c749a4589df
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,47 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=wateRmelon
+_pkgver=2.2.0
+pkgname=r-${_pkgname,,}
+pkgver=2.2.0
+pkgrel=1
+pkgdesc='Illumina 450 and EPIC methylation array normalization and metrics'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biobase
+  r-illuminahumanmethylation450kanno.ilmn12.hg19
+  r-illuminaio
+  r-limma
+  r-lumi
+  r-matrixstats
+  r-methylumi
+  r-roc
+)
+optdepends=(
+  r-biocstyle
+  r-flowsorted.blood.450k
+  r-flowsorted.blood.epic
+  r-illuminahumanmethylationepicanno.ilm10b2.hg19
+  r-illuminahumanmethylationepicmanifest
+  r-irlba
+  r-knitr
+  r-minfi
+  r-preprocesscore
+  r-rmarkdown
+  r-rpmm
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('fb92984b6eafe8bc56849e1520961749dec7285e195c5e8754ccedbc94f3b829')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: