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| author | Pekka Ristola | 2023-11-18 12:44:34 +0200 |
|---|---|---|
| committer | Pekka Ristola | 2023-11-18 12:44:34 +0200 |
| commit | 39509d349676698817e501491b36f9431edac6d5 (patch) | |
| tree | 5c7b18e1e3d1f8347f1f247597f07969bb1c3773 | |
| download | aur-39509d349676698817e501491b36f9431edac6d5.tar.gz | |
Version 1.2.0
| -rw-r--r-- | .SRCINFO | 27 | ||||
| -rw-r--r-- | PKGBUILD | 43 |
2 files changed, 70 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..1d392e1b6318 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,27 @@ +pkgbase = r-zygositypredictor + pkgdesc = Package for prediction of zygosity for variants/genes in NGS data + pkgver = 1.2.0 + pkgrel = 1 + url = https://bioconductor.org/packages/ZygosityPredictor + arch = any + license = GPL2 + depends = r-delayedarray + depends = r-dplyr + depends = r-genomicalignments + depends = r-genomicranges + depends = r-igraph + depends = r-iranges + depends = r-purrr + depends = r-rsamtools + depends = r-stringr + depends = r-tibble + depends = r-variantannotation + optdepends = r-biocstyle + optdepends = r-knitr + optdepends = r-rmarkdown + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/ZygosityPredictor_1.2.0.tar.gz + md5sums = c201664f307a2cf422119e2fa87759cf + sha256sums = cc26ab6a56051056f82a4cc972d7de845c8e78e874ee40969e992de4d2cf7c03 + +pkgname = r-zygositypredictor diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..f21dd4cfede9 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,43 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=ZygosityPredictor +_pkgver=1.2.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Package for prediction of zygosity for variants/genes in NGS data" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(GPL2) +depends=( + r-delayedarray + r-dplyr + r-genomicalignments + r-genomicranges + r-igraph + r-iranges + r-purrr + r-rsamtools + r-stringr + r-tibble + r-variantannotation +) +optdepends=( + r-biocstyle + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('c201664f307a2cf422119e2fa87759cf') +sha256sums=('cc26ab6a56051056f82a4cc972d7de845c8e78e874ee40969e992de4d2cf7c03') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} |