Initial import.

2 files changed, 97 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..05a471474f1d
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,18 @@
+pkgbase = raxml-standard-git
+	pkgdesc = Randomized Axelerated Maximum Likelihood - standard version from git
+	pkgver = 20150208
+	pkgrel = 1
+	url = https://github.com/stamatak/standard-RAxML
+	arch = i686
+	arch = x86_64
+	license = GPL3
+	makedepends = git
+	makedepends = make
+	optdepends = openmpi: for buildin MPI capable binary
+	conflicts = raxml
+	conflicts = raxml-mpi
+	source = git+git://github.com/stamatak/standard-RAxML.git
+	md5sums = SKIP
+
+pkgname = raxml-standard-git
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..4e12992df85d
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,79 @@
+# Contributor: Stunts <f.pinamartins@gmail.com> 
+pkgname=raxml-standard-git
+pkgver=20150208
+pkgrel=1
+pkgdesc="Randomized Axelerated Maximum Likelihood - standard version from git"
+arch=(i686 x86_64)
+url="https://github.com/stamatak/standard-RAxML"
+license=('GPL3')
+
+depends=()
+optdepends=('openmpi: for buildin MPI capable binary')
+makedepends=('git' 'make')
+conflicts=('raxml' 'raxml-mpi')
+source=('git+git://github.com/stamatak/standard-RAxML.git')
+md5sums=('SKIP')
+
+pkgver() {
+  cd ${srcdir}/standard-RAxML
+  git log -1 --format='%cd' --date=short | tr -d -- '-'
+}
+
+prepare() {
+#Check whether the CPU supports SSE3 instruction set:
+  if $(grep -q pni /proc/cpuinfo)
+  then
+      makefile=Makefile.SSE3
+      extension=-SSE3
+      msg "Using SSE3 instruction set since your CPU seems to support it."
+  else
+      makefile=Makefile
+      extension=''
+      msg "Not using SSE3 instructions set since your CPU does not seem to support it."
+  fi
+}
+
+build() {
+  cd ${srcdir}/standard-RAxML
+  
+  #Build single thread binary
+  msg "Building single thread binary..."
+  make -f ${makefile}.gcc
+  rm *.o
+
+  #Build MPI binary (if OpenMPI is available)
+  msg "Looking for mpicc..."
+  if $(which mpicc |grep -q "/")
+  then
+      msg "Found a suitable mpicc, building MPI binary..."
+      make -f ${makefile}.MPI.gcc
+      rm *.o
+      mpi=1
+  else
+      msg "No suitable mpicc found, skipping MPI binary build."
+      mpi=0
+  fi
+
+  #Build Pthreads binary
+  msg "Building PTHREADS binary..."
+  make -f ${makefile}.PTHREADS.gcc
+  rm *.o
+}
+
+package() {
+   
+  if $(grep -q pni /proc/cpuinfo) 
+  then
+      extension=-SSE3
+  else
+      extension=''
+  fi
+
+  install -d ${pkgdir}/usr/bin
+  cp ${srcdir}/standard-RAxML/raxmlHPC${extension} ${pkgdir}/usr/bin/
+  cp ${srcdir}/standard-RAxML/raxmlHPC-PTHREADS${extension} ${pkgdir}/usr/bin/
+  if [ $mpi ]
+  then
+    cp ${srcdir}/standard-RAxML/raxmlHPC-MPI${extension} ${pkgdir}/usr/bin/
+  fi
+}