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authorBioArchLinuxBot2022-08-30 13:04:07 +0000
committerBioArchLinuxBot2022-08-30 13:04:07 +0000
commit7bb4ecb6390d3e5b5d4ce29815c8b2adecf324e6 (patch)
tree65d2b0d6e277eb957756e3fe47c7605da1432d87
parent285d0943e82626944ec986a018dba7c9a507a81d (diff)
downloadaur-7bb4ecb6390d3e5b5d4ce29815c8b2adecf324e6.tar.gz
[lilac] updated to 1.2.0-2
-rw-r--r--.SRCINFO23
-rw-r--r--PKGBUILD50
2 files changed, 32 insertions, 41 deletions
diff --git a/.SRCINFO b/.SRCINFO
index 3e198932ff07..3fbf7c901483 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,19 +1,22 @@
-# Generated by mksrcinfo v8
-# Thu Mar 9 08:25:06 UTC 2017
pkgbase = revbayes-mpi
- pkgdesc = bayesian phylogenetic inference using probabilistic graphical models and an interpreted language
- pkgver = 1.0.4
- pkgrel = 1
+ pkgdesc = Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language https://doi.org/10.1093/sysbio/syw021
+ pkgver = 1.2.0
+ pkgrel = 2
url = https://github.com/revbayes/revbayes
- arch = i686
arch = x86_64
license = GPL3
makedepends = boost
+ makedepends = meson
+ makedepends = ninja
makedepends = cmake
+ makedepends = git
+ depends = gcc-libs
+ depends = boost-libs
+ depends = openlibm
depends = openmpi
- conflicts = revbayes-mpi-git
- source = revbayes-1.0.4.tar.gz::https://github.com/revbayes/revbayes/archive/v1.0.4-release.tar.gz
- md5sums = 5d6de96bcb3b2686b270856de3555a58
+ conflicts = lrzsz
+ conflicts = revbayes-mpi
+ source = git+https://github.com/revbayes/revbayes.git#tag=v1.2.0
+ md5sums = SKIP
pkgname = revbayes-mpi
-
diff --git a/PKGBUILD b/PKGBUILD
index f64dc2b741ae..5f86a125145f 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,44 +1,32 @@
-# Maintainer: Christian Krause ("wookietreiber") <christian.krause@mailbox.org>
-
pkgname=revbayes-mpi
-
-pkgver=1.0.4
-pkgrel=1
-pkgdesc="bayesian phylogenetic inference using probabilistic graphical models and an interpreted language"
-arch=(i686 x86_64)
+_pkgname=revbayes
+pkgver=1.2.0
+pkgrel=2
+pkgdesc="Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language https://doi.org/10.1093/sysbio/syw021"
+arch=(x86_64)
url="https://github.com/revbayes/revbayes"
license=(GPL3)
-depends=(openmpi)
-makedepends=(boost cmake)
-conflicts=('revbayes-mpi-git')
-source=("revbayes-$pkgver.tar.gz::https://github.com/revbayes/revbayes/archive/v$pkgver-release.tar.gz")
+depends=('gcc-libs' 'boost-libs' 'openlibm' 'openmpi')
+makedepends=('boost' 'meson' 'ninja' 'cmake' 'git')
+conflicts=('lrzsz' 'revbayes-mpi')
+source=("git+$url.git#tag=v$pkgver")
+md5sums=('SKIP')
prepare() {
- cd $srcdir/revbayes-$pkgver-release
-
- rm -rf boost_*
-
- cd projects/cmake
-
- mkdir -p build
-
- ./regenerate.sh -boost false -mpi true
+ cd $srcdir/$_pkgname
+ git submodule update --init --recursive
+ ./projects/meson/generate.sh
}
build() {
- cd $srcdir/revbayes-$pkgver-release/projects/cmake/build
-
- cmake \
- -DCMAKE_INSTALL_PREFIX=/usr \
- -DCMAKE_BUILD_TYPE=Release \
-
- make
+ cd $srcdir/$_pkgname
+ arch-meson build -Dmpi=true
+ ninja -C build
}
package() {
- cd $srcdir/revbayes-$pkgver-release/projects/cmake
-
- install -Dm755 rb-mpi $pkgdir/usr/bin/rb-mpi
+ cd $srcdir/$_pkgname
+ DESTDIR="${pkgdir}" ninja -C build install
}
-md5sums=('5d6de96bcb3b2686b270856de3555a58')
+