Initial commit

2 files changed, 40 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..2b7e98b34e7c
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,13 @@
+pkgbase = rmotifgen
+	pkgdesc = Random motif sequence generator for genomic sequences
+	pkgver = 3.0
+	pkgrel = 1
+	url = http://bioinformatics.louisville.edu/rMotifGen.html
+	arch = i686
+	arch = x86_64
+	license = GPL
+	source = http://bioinformatics.louisville.edu/localresources/software/rMotifGen3.0.tar.gz
+	md5sums = b8b43a6cfd3c8ade4eee3306c9661eda
+
+pkgname = rmotifgen
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..8c1018bd1027
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,27 @@
+# Maintainer: allencch <allencch at hotmail dot com>
+pkgname=rmotifgen
+pkgver=3.0
+pkgrel=1
+pkgdesc="Random motif sequence generator for genomic sequences"
+arch=('i686' 'x86_64')
+url="http://bioinformatics.louisville.edu/rMotifGen.html"
+license=('GPL')
+depends=()
+source=("http://bioinformatics.louisville.edu/localresources/software/rMotifGen${pkgver}.tar.gz")
+md5sums=('b8b43a6cfd3c8ade4eee3306c9661eda')
+
+build() {
+    cd "${srcdir}/rMotifGen_v${pkgver}"
+    sed -i -e '38i#include <cstring>' CommonRoutines.cpp
+    sed -i -e 's|PAM1\.prob|/opt/rMotifGen/PAM1.prob|' SubstitutionMatrices.cpp
+    sed -i -e '/^CCFLAGS/ s|$| -fpermissive|' Makefile
+    make
+}
+
+package() {
+    mkdir -p "${pkgdir}/usr/bin"
+    mkdir -p "${pkgdir}/opt/rMotifGen"
+    cd "${srcdir}/rMotifGen_v${pkgver}"
+    install -m755 rMotifGen "${pkgdir}/usr/bin"
+    cp PAM1.prob README *.PSSM AAinput.dat DNAinput.dat "${pkgdir}/opt/rMotifGen"
+}