diff options
| author | Grey Christoforo | 2015-06-20 19:54:08 +0200 |
|---|---|---|
| committer | Grey Christoforo | 2015-06-20 19:54:08 +0200 |
| commit | 086d4b5b806e41ece935e7d77cc33597f213bd32 (patch) | |
| tree | 57c342e66637511fef7944bff9652cae0d576192 | |
| download | aur-086d4b5b806e41ece935e7d77cc33597f213bd32.tar.gz | |
Initial import
| -rw-r--r-- | .SRCINFO | 17 | ||||
| -rw-r--r-- | PKGBUILD | 32 | ||||
| -rw-r--r-- | rsem.install | 7 |
3 files changed, 56 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..2a3cded53282 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,17 @@ +pkgbase = rsem + pkgdesc = accurate quantification of gene and isoform expression from RNA-Seq data + pkgver = 1.2.19 + pkgrel = 1 + url = http://deweylab.biostat.wisc.edu/rsem/ + install = rsem.install + arch = i686 + arch = x86_64 + license = GNU + depends = perl + depends = r + optdepends = bowtie2 + source = https://github.com/bli25wisc/RSEM/archive/v1.2.19.tar.gz + md5sums = 69667ee47337617847dc97da2765fd08 + +pkgname = rsem + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..997428ddff78 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,32 @@ +# Maintainer: Grey Christoforo <grey at christoforo dot net> + +pkgname=rsem +_pkgname=RSEM +pkgver=1.2.19 +pkgrel=1 +pkgdesc="accurate quantification of gene and isoform expression from RNA-Seq data" +arch=('i686' 'x86_64') +url="http://deweylab.biostat.wisc.edu/rsem/" +install=${pkgname}.install +license=GNU +depends=('perl' 'r') +optdepends=('bowtie2') +source=(https://github.com/bli25wisc/${_pkgname}/archive/v${pkgver}.tar.gz) +md5sums=('69667ee47337617847dc97da2765fd08') + +build() { + cd "${srcdir}/${_pkgname}-${pkgver}" + make +} + +package() { + cd "${srcdir}/${_pkgname}-${pkgver}" + mkdir -p "${pkgdir}/usr/bin/${pkgname}" + mv `find . -maxdepth 1 -type f -perm -u+x` "${pkgdir}/usr/bin/${pkgname}/." + mv WHAT_IS_NEW "${pkgdir}/usr/bin/${pkgname}/." + + mkdir -p "$pkgdir/etc/profile.d" + echo "export PATH=/usr/bin/${pkgname}:"'$PATH' > "$pkgdir/etc/profile.d/${pkgname}.sh" +} + +# vim:set ts=2 sw=2 et: diff --git a/rsem.install b/rsem.install new file mode 100644 index 000000000000..61f172078568 --- /dev/null +++ b/rsem.install @@ -0,0 +1,7 @@ +post_install() { + echo + echo "To use rsem, log out and log back in, or run" + echo "source /etc/profile" + echo "To enable it immediately" + echo +} |