version bump and fix for stupid packaging

2 files changed, 13 insertions, 12 deletions

diff --git a/.SRCINFO b/.SRCINFO
index b829a43b3d1e..807a3e56a847 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,8 +1,8 @@
 # Generated by mksrcinfo v8
-# Fri Jul  1 15:23:52 UTC 2016
+# Fri Nov 25 15:18:11 UTC 2016
 pkgbase = rsem
 	pkgdesc = accurate quantification of gene and isoform expression from RNA-Seq data
-	pkgver = 1.2.31
+	pkgver = 1.3.0
 	pkgrel = 1
 	url = http://deweylab.biostat.wisc.edu/rsem/
 	install = rsem.install
@@ -12,8 +12,8 @@ pkgbase = rsem
 	depends = perl
 	depends = r
 	optdepends = bowtie2
-	source = https://github.com/bli25wisc/RSEM/archive/v1.2.31.tar.gz
-	md5sums = 00ce62a24eebef7d0b7d4f866eee0fc7
+	source = https://github.com/deweylab/RSEM/archive/v1.3.0.tar.gz
+	md5sums = 9728161625d339d022130e2428604bf5
 
 pkgname = rsem
 
diff --git a/PKGBUILD b/PKGBUILD
index 03f8b8b93fc8..747efc436b98 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,8 +1,8 @@
 # Maintainer: Grey Christoforo <grey at christoforo dot net>
 
 pkgname=rsem
-_pkgname=RSEM
-pkgver=1.2.31
+_pkgname=${pkgname^^}
+pkgver=1.3.0
 pkgrel=1
 pkgdesc="accurate quantification of gene and isoform expression from RNA-Seq data"
 arch=('i686' 'x86_64')
@@ -11,8 +11,8 @@ install=${pkgname}.install
 license=('GNU GPLv3')
 depends=('perl' 'r')
 optdepends=('bowtie2')
-source=(https://github.com/bli25wisc/${_pkgname}/archive/v${pkgver}.tar.gz)
-md5sums=('00ce62a24eebef7d0b7d4f866eee0fc7')
+source=(https://github.com/deweylab/${_pkgname}/archive/v${pkgver}.tar.gz)
+md5sums=('9728161625d339d022130e2428604bf5')
 
 build() {
    cd "${srcdir}/${_pkgname}-${pkgver}"
@@ -20,13 +20,14 @@ build() {
 }
 
 package() {
+   mkdir -p "${pkgdir}/opt/${pkgname}"
+
    cd "${srcdir}/${_pkgname}-${pkgver}"
-   mkdir -p "${pkgdir}/usr/bin/${pkgname}"
-   mv `find . -maxdepth 1 -type f -perm -u+x` "${pkgdir}/usr/bin/${pkgname}/."
-   mv WHAT_IS_NEW "${pkgdir}/usr/bin/${pkgname}/."
+   make install prefix="${pkgdir}/opt/${pkgname}"
+   #mv "${srcdir}/${_pkgname}-${pkgver}" "${pkgdir}/opt/${pkgname}"
 
    mkdir -p "$pkgdir/etc/profile.d"
-   echo "export PATH=/usr/bin/${pkgname}:"'$PATH' > "$pkgdir/etc/profile.d/${pkgname}.sh"
+   echo "export PATH=/opt/${pkgname}/bin:"'$PATH' > "$pkgdir/etc/profile.d/${pkgname}.sh"
 }
 
 # vim:set ts=2 sw=2 et: