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| author | Thiago L. A. Miller | 2018-08-29 04:30:45 -0300 |
|---|---|---|
| committer | Thiago L. A. Miller | 2018-08-29 04:30:45 -0300 |
| commit | 226a47e0b83ad39e1c913fec801a7c7988306d0d (patch) | |
| tree | e4d8dc0c693d898fdae056af6e0aaccdc2b684c0 | |
| download | aur-226a47e0b83ad39e1c913fec801a7c7988306d0d.tar.gz | |
First commit - salmon v0.11.2
| -rw-r--r-- | .SRCINFO | 14 | ||||
| -rw-r--r-- | PKGBUILD | 33 |
2 files changed, 47 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..63596a8034e6 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,14 @@ +pkgbase = salmon + pkgdesc = Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments + pkgver = 0.11.2 + pkgrel = 1 + url = https://combine-lab.github.io/salmon/ + arch = x86_64 + license = GPL + makedepends = cmake + depends = boost-libs>=1.55 + source = https://github.com/COMBINE-lab/salmon/releases/download/v0.11.2/salmon-0.11.2-linux_x86_64.tar.gz + md5sums = 116bc842f2da2b30f1c73581157ffc43 + +pkgname = salmon + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..7c2a3f4e086f --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,33 @@ +# Maintainer: Thiago L. A. Miller <thiago_leisrael@hotmail.com> +pkgname=salmon +pkgver=0.11.2 +pkgrel=1 +pkgdesc="Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments" +arch=('x86_64') +url="https://combine-lab.github.io/$pkgname/" +license=('GPL') +depends=('boost>=1.55' 'ca-certificates' 'unzip') +makedepends=('cmake') +source=("$pkgname-$pkgver.tar.gz"::"https://github.com/COMBINE-lab/$pkgname/archive/v$pkgver.tar.gz") +md5sums=('d81f083e71adc6d46a21ed14df624136') + +build() { + cd "$pkgname-$pkgver" + cmake \ + -DCMAKE_COLOR_MAKEFILE:BOOL='ON' \ + -DCMAKE_INSTALL_PREFIX:PATH='/usr' \ + -Wno-dev \ + . + make +} + +package() { + cd "$pkgname-$pkgver" + make DESTDIR="$pkgdir" install +} + +# Local Variables: +# mode: shell-script +# sh-basic-offset: 2 +# End: +# vim:set ts=2 sw=2 et: |