diff options
| author | BioArchLinuxBot | 2022-10-29 07:18:18 +0000 |
|---|---|---|
| committer | BioArchLinuxBot | 2022-10-29 07:18:18 +0000 |
| commit | 963839b10110750e262bbd359bc891fb31d51661 (patch) | |
| tree | 1a31d7af11475b7055807728c455b6170656eb8e | |
| parent | f0381def094a89c922050653f324bf936a998ddb (diff) | |
| download | aur-963839b10110750e262bbd359bc891fb31d51661.tar.gz | |
[lilac] updated to 1.9.0-2
| -rw-r--r-- | .SRCINFO | 15 | ||||
| -rw-r--r-- | PKGBUILD | 17 |
2 files changed, 19 insertions, 13 deletions
@@ -1,19 +1,20 @@ pkgbase = salmon pkgdesc = Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments pkgver = 1.9.0 - pkgrel = 1 + pkgrel = 2 url = https://combine-lab.github.io/salmon/ arch = x86_64 - license = GPL v3.0 + license = GPL makedepends = boost>=1.55 makedepends = cmake makedepends = unzip - depends = bzip2 + makedepends = cereal depends = intel-tbb - depends = xz + depends = jemalloc + depends = boost-libs + depends = bzip2 options = !emptydirs - source = salmon-1.9.0.tar.gz::https://github.com/COMBINE-lab/salmon/archive/refs/tags/v1.9.0.tar.gz - md5sums = 8bdb73fbda5209953d6c480a67f52a9f + source = salmon-1.9.0.tar.gz::https://github.com/COMBINE-lab/salmon/archive/v1.9.0.tar.gz + sha256sums = 450d953a5c43fe63fd745733f478d3fbaf24d926cb52731fd38ee21c4990d613 pkgname = salmon - @@ -1,16 +1,16 @@ # Maintainer: bipin kumar <bipin@ccmb.res.in> pkgname=salmon pkgver=1.9.0 -pkgrel=1 +pkgrel=2 pkgdesc="Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments" arch=('x86_64') url="https://combine-lab.github.io/$pkgname/" -license=('GPL v3.0') -depends=('bzip2' 'intel-tbb' 'xz') -makedepends=('boost>=1.55' 'cmake' 'unzip') +license=('GPL') +depends=('intel-tbb' 'jemalloc' 'boost-libs' 'bzip2') +makedepends=('boost>=1.55' 'cmake' 'unzip' 'cereal') options=('!emptydirs') source=("$pkgname-$pkgver.tar.gz"::"https://github.com/COMBINE-lab/$pkgname/archive/v$pkgver.tar.gz") -md5sums=('8bdb73fbda5209953d6c480a67f52a9f') +sha256sums=('450d953a5c43fe63fd745733f478d3fbaf24d926cb52731fd38ee21c4990d613') prepare() { cd "$pkgname-$pkgver" @@ -20,7 +20,6 @@ prepare() { } build() { - cd "$pkgname-$pkgver" # FIXME: NO_IPO=TRUE is for some reason needed in 1.3.0 @@ -31,6 +30,7 @@ build() { -DCMAKE_COLOR_MAKEFILE:BOOL='ON' \ -DCMAKE_INSTALL_PREFIX:PATH='/usr' \ -Wno-dev \ + -DUSE_SHARED_LIBS=ON \ . make @@ -39,6 +39,11 @@ build() { package() { cd "$pkgname-$pkgver" make DESTDIR="$pkgdir" install + + install -Dm644 include/{*.h,*.hpp,*.tpp} -t ${pkgdir}/usr/include/${pkgname} + + # clear cmake files + rm -rf ${pkgdir}/usr/lib/{graphdump,ntcard,twopaco} } # Local Variables: |