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| author | BioArchLinuxBot | 2023-07-02 12:05:52 +0000 |
|---|---|---|
| committer | BioArchLinuxBot | 2023-07-02 12:05:52 +0000 |
| commit | a9334a911c0a27035747379e520dde6c3f77b25f (patch) | |
| tree | 846fd93409b084472ab653239f8cb98bf3793872 | |
| parent | 0263b355570909cdab7456a0f22ee0c1fdcfbb5b (diff) | |
| download | aur-a9334a911c0a27035747379e520dde6c3f77b25f.tar.gz | |
[lilac] updated to 1.10.2-3
| -rw-r--r-- | .SRCINFO | 8 | ||||
| -rw-r--r-- | PKGBUILD | 13 |
2 files changed, 17 insertions, 4 deletions
@@ -1,7 +1,7 @@ pkgbase = salmon pkgdesc = Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments pkgver = 1.10.2 - pkgrel = 1 + pkgrel = 3 url = https://combine-lab.github.io/salmon/ arch = x86_64 license = GPL3 @@ -11,9 +11,15 @@ pkgbase = salmon makedepends = cereal makedepends = curl makedepends = bzip2 + makedepends = python-sphinx depends = intel-tbb + depends = bzip2 depends = jemalloc depends = boost-libs + depends = gcc-libs + depends = xz + depends = zlib + depends = glibc options = !emptydirs source = salmon-1.10.2.tar.gz::https://github.com/COMBINE-lab/salmon/archive/v1.10.2.tar.gz sha256sums = 976989182160fef3afb4429ee8b85d8dd39ed6ca212bb14d6a65cde0e985fb98 @@ -3,13 +3,13 @@ # Contributor: Thiago L. A. Miller <thiago_leisrael@hotmail.com> pkgname=salmon pkgver=1.10.2 -pkgrel=1 +pkgrel=3 pkgdesc="Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments" arch=('x86_64') url="https://combine-lab.github.io/$pkgname/" license=('GPL3') -depends=('intel-tbb' 'jemalloc' 'boost-libs') -makedepends=('boost>=1.55' 'cmake' 'unzip' 'cereal' 'curl' 'bzip2') +depends=('intel-tbb' 'bzip2' 'jemalloc' 'boost-libs' 'gcc-libs' 'xz' 'zlib' 'glibc') +makedepends=('boost>=1.55' 'cmake' 'unzip' 'cereal' 'curl' 'bzip2' 'python-sphinx') options=('!emptydirs') source=("$pkgname-$pkgver.tar.gz"::"https://github.com/COMBINE-lab/$pkgname/archive/v$pkgver.tar.gz") sha256sums=('976989182160fef3afb4429ee8b85d8dd39ed6ca212bb14d6a65cde0e985fb98') @@ -38,6 +38,9 @@ build() { -DUSE_SHARED_LIBS=ON cmake --build build + # build manpages + cd doc + make man } check() { @@ -54,6 +57,10 @@ package() { install -Dm644 include/{*.h,*.hpp,*.tpp} -t ${pkgdir}/usr/include/${pkgname} + #install manpages + install -d ${pkgdir}/usr/share/man/man1/ + install -Dm644 doc/build/man/salmon.1 ${pkgdir}/usr/share/man/man1/salmon.1 + # clear cmake files rm -rf ${pkgdir}/usr/lib/{graphdump,ntcard,twopaco} } |