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authorChris Vittal2019-12-08 10:18:00 -0500
committerChris Vittal2019-12-08 10:18:00 -0500
commit27b6c39e681177cd102d93b6b8f964ffcae649a3 (patch)
tree7e0d78e24b14bc9fa801fa462592ae19e7de19d5
parent41ad5d7c00425ee2a54bd43e6f596a08131ff47a (diff)
downloadaur-27b6c39e681177cd102d93b6b8f964ffcae649a3.tar.gz
Update to 1.10
-rw-r--r--PKGBUILD14
1 files changed, 3 insertions, 11 deletions
diff --git a/PKGBUILD b/PKGBUILD
index 29d3b0ac3190..d0ea69bd7b7f 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -3,26 +3,22 @@
# Contributor: Markus Heuser <markus.heuser@web.de>
pkgname=samtools
-pkgver=1.9
+pkgver=1.10
pkgrel=1
pkgdesc="tools for manipulating next-generation sequencing data"
arch=('i686' 'x86_64')
url="http://www.htslib.org/"
license=('custom')
depends=('htslib')
-optdepends=('luajit: needed for r2plot.lua vcfutils.lua'
- 'python2: needed for varfilter.py')
-options=('staticlibs')
+optdepends=('luajit: needed for r2plot.lua vcfutils.lua')
source=(https://github.com/samtools/samtools/releases/download/$pkgver/$pkgname-$pkgver.tar.bz2)
+sha256sums=('7b9ec5f05d61ec17bd9a82927e45d8ef37f813f79eb03fe06c88377f1bd03585')
prepare() {
cd $srcdir/$pkgname-$pkgver
# prevent shipped htslib to be used
rm -rf htslib-$pkgver || exit 1
-
- sed -e 's|#!/usr/bin/env python|#!/usr/bin/env python2|' \
- -i misc/varfilter.py
}
build() {
@@ -53,9 +49,5 @@ package() {
install -d $pkgdir/usr/include/bam
install -Dm644 *.h $pkgdir/usr/include/bam
- install -Dm644 libbam.a $pkgdir/usr/lib/libbam.a
-
install -Dm644 LICENSE $pkgdir/usr/share/licenses/$pkgname/LICENSE
}
-
-md5sums=('cca9a40d9b91b007af2ff905cb8b5924')