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author | Chris Vittal | 2019-12-08 10:18:00 -0500 |
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committer | Chris Vittal | 2019-12-08 10:18:00 -0500 |
commit | 27b6c39e681177cd102d93b6b8f964ffcae649a3 (patch) | |
tree | 7e0d78e24b14bc9fa801fa462592ae19e7de19d5 | |
parent | 41ad5d7c00425ee2a54bd43e6f596a08131ff47a (diff) | |
download | aur-27b6c39e681177cd102d93b6b8f964ffcae649a3.tar.gz |
Update to 1.10
-rw-r--r-- | PKGBUILD | 14 |
1 files changed, 3 insertions, 11 deletions
@@ -3,26 +3,22 @@ # Contributor: Markus Heuser <markus.heuser@web.de> pkgname=samtools -pkgver=1.9 +pkgver=1.10 pkgrel=1 pkgdesc="tools for manipulating next-generation sequencing data" arch=('i686' 'x86_64') url="http://www.htslib.org/" license=('custom') depends=('htslib') -optdepends=('luajit: needed for r2plot.lua vcfutils.lua' - 'python2: needed for varfilter.py') -options=('staticlibs') +optdepends=('luajit: needed for r2plot.lua vcfutils.lua') source=(https://github.com/samtools/samtools/releases/download/$pkgver/$pkgname-$pkgver.tar.bz2) +sha256sums=('7b9ec5f05d61ec17bd9a82927e45d8ef37f813f79eb03fe06c88377f1bd03585') prepare() { cd $srcdir/$pkgname-$pkgver # prevent shipped htslib to be used rm -rf htslib-$pkgver || exit 1 - - sed -e 's|#!/usr/bin/env python|#!/usr/bin/env python2|' \ - -i misc/varfilter.py } build() { @@ -53,9 +49,5 @@ package() { install -d $pkgdir/usr/include/bam install -Dm644 *.h $pkgdir/usr/include/bam - install -Dm644 libbam.a $pkgdir/usr/lib/libbam.a - install -Dm644 LICENSE $pkgdir/usr/share/licenses/$pkgname/LICENSE } - -md5sums=('cca9a40d9b91b007af2ff905cb8b5924') |