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authorChristian Krause2016-05-29 20:27:11 +0200
committerChristian Krause2016-05-29 20:27:11 +0200
commite5fa9436d5b83c5a50754e22582a393d6ac9d574 (patch)
treefb5836df27d7ea81ab45368c010e15d4444e5538
parent2f18943f959bc360dbb8b12cd54ff7d5f3f275f7 (diff)
downloadaur-e5fa9436d5b83c5a50754e22582a393d6ac9d574.tar.gz
samtools-1.3.1-1
-rw-r--r--.SRCINFO9
-rw-r--r--PKGBUILD8
2 files changed, 8 insertions, 9 deletions
diff --git a/.SRCINFO b/.SRCINFO
index f3232a7ca5b..7af9e79e135 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,20 +1,19 @@
# Generated by mksrcinfo v8
-# Sun Jan 10 10:05:21 UTC 2016
+# Sun May 29 18:26:52 UTC 2016
pkgbase = samtools
pkgdesc = tools for manipulating next-generation sequencing data
- pkgver = 1.3
+ pkgver = 1.3.1
pkgrel = 1
url = http://www.htslib.org/
arch = i686
arch = x86_64
license = custom
depends = htslib
- depends = perl
optdepends = luajit: needed for r2plot.lua vcfutils.lua
optdepends = python2: needed for varfilter.py
options = staticlibs
- source = https://github.com/samtools/samtools/releases/download/1.3/samtools-1.3.tar.bz2
- md5sums = 7ab98b5c988e254d9bb5d796bf9337c9
+ source = https://github.com/samtools/samtools/releases/download/1.3.1/samtools-1.3.1.tar.bz2
+ md5sums = a7471aa5a1eb7fc9cc4c6491d73c2d88
pkgname = samtools
diff --git a/PKGBUILD b/PKGBUILD
index fbdf80b1544..45422e62d87 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -2,24 +2,24 @@
# Contributor: Markus Heuser <markus.heuser@web.de>
pkgname=samtools
-pkgver=1.3
+pkgver=1.3.1
pkgrel=1
pkgdesc="tools for manipulating next-generation sequencing data"
arch=('i686' 'x86_64')
url="http://www.htslib.org/"
license=('custom')
-depends=('htslib' 'perl')
+depends=('htslib')
optdepends=('luajit: needed for r2plot.lua vcfutils.lua'
'python2: needed for varfilter.py')
options=('staticlibs')
source=(https://github.com/samtools/$pkgname/releases/download/$pkgver/$pkgname-$pkgver.tar.bz2)
-md5sums=('7ab98b5c988e254d9bb5d796bf9337c9')
+md5sums=('a7471aa5a1eb7fc9cc4c6491d73c2d88')
prepare() {
cd $srcdir/$pkgname-$pkgver
# prevent shipped htslib to be used
- rm -rf htslib-1.3
+ rm -rf htslib-1.3.1
sed -e 's|#!/usr/bin/env python|#!/usr/bin/env python2|' \
-i misc/varfilter.py