newpkg: samtools-git 1.10.r98.gfaab8b0-1

2 files changed, 69 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..7fbf1722364a
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,20 @@
+pkgbase = samtools-git
+	pkgdesc = Tools for manipulating next-generation sequencing data
+	pkgver = 1.10.r98.gfaab8b0
+	pkgrel = 1
+	url = https://www.htslib.org/
+	arch = i686
+	arch = x86_64
+	license = MIT
+	makedepends = git
+	depends = glibc
+	depends = htslib
+	depends = ncurses
+	depends = zlib
+	provides = samtools
+	conflicts = samtools
+	source = git+https://github.com/samtools/samtools.git
+	sha256sums = SKIP
+
+pkgname = samtools-git
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..fa4ffa9bf7e7
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,49 @@
+# Maintainer: Chocobo1 <chocobo1 AT archlinux DOT net>
+
+pkgname=samtools-git
+pkgver=1.10.r98.gfaab8b0
+pkgrel=1
+pkgdesc="Tools for manipulating next-generation sequencing data"
+arch=('i686' 'x86_64')
+url="https://www.htslib.org/"
+license=('MIT')
+depends=('glibc' 'htslib' 'ncurses' 'zlib')
+makedepends=('git')
+provides=('samtools')
+conflicts=('samtools')
+source=("git+https://github.com/samtools/samtools.git")
+sha256sums=('SKIP')
+
+
+pkgver() {
+  cd "samtools"
+
+  git describe --long --tags | sed 's/^v//;s/\([^-]*-g\)/r\1/;s/-/./g'
+}
+
+build() {
+  cd "samtools"
+
+  autoreconf -fi
+  ./configure \
+    --prefix="/usr" \
+    --with-htslib=system
+  make
+}
+
+check() {
+  cd "samtools"
+
+  #make check
+}
+
+package() {
+  cd "samtools"
+
+  make DESTDIR="$pkgdir" install
+  install -Dm755 "misc"/*.lua -t "$pkgdir/usr/bin"
+
+  install -Dm644 *.h -t "$pkgdir/usr/include/bam"
+
+  install -Dm644 "LICENSE" -t "$pkgdir/usr/share/licenses/samtools"
+}