diff options
| author | PumpkinCheshire | 2021-07-03 14:42:15 +0800 |
|---|---|---|
| committer | PumpkinCheshire | 2021-07-03 14:42:15 +0800 |
| commit | cb7a9fa07727e413431372820d985e08245e024b (patch) | |
| tree | 60226c9cb50d9b3a3824e15b5b34ae17ff9f31e2 | |
| download | aur-skesa.tar.gz | |
init
| -rw-r--r-- | .SRCINFO | 22 | ||||
| -rw-r--r-- | .gitignore | 4 | ||||
| -rw-r--r-- | PKGBUILD | 42 |
3 files changed, 68 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..e9ddfd9daa9a --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,22 @@ +pkgbase = skesa + pkgdesc = A de-novo sequence read assembler and a de Bruijn graph based target enriched de-novo assembler. + pkgver = 2.4.0 + pkgrel = 1 + url = https://github.com/ncbi/SKESA + arch = x86_64 + license = custom + makedepends = gcc + makedepends = cmake + makedepends = boost + makedepends = make + makedepends = sed + makedepends = gcc-libs + makedepends = zlib + provides = skesa=2.4.0 + provides = saute=1.3.0 + provides = gfa_connector=1.1.0 + provides = kmercounter=2.2.0 + source = https://github.com/ncbi/SKESA/archive/refs/tags/skesa.2.4.0_saute.1.3.0_1.tar.gz + b2sums = 08b0477670a3e7751f598e903eb227e766bce91ba2e44cca1b8accbc7abff7191b3f9117e639d48f4d99c86bee3773385c25767bd755dae14d4186e8cfc264bf + +pkgname = skesa diff --git a/.gitignore b/.gitignore new file mode 100644 index 000000000000..018a3de08144 --- /dev/null +++ b/.gitignore @@ -0,0 +1,4 @@ +* +!PKGBUILD +!.SRCINFO +!.gitignore diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..3ae581fc448f --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,42 @@ +# Maintainer: PumpkinCheshire <me at pumpkincheshire dot top> + +pkgname=skesa +pkgver=2.4.0 +pkgrel=1 +arch=('x86_64') +url="https://github.com/ncbi/SKESA" +pkgdesc="A de-novo sequence read assembler and a de Bruijn graph based target enriched de-novo assembler." +license=('custom') +makedepends=('gcc' 'cmake' 'boost' 'make' 'sed' 'gcc-libs' 'zlib') +provides=("skesa=2.4.0" "saute=1.3.0" "gfa_connector=1.1.0" "kmercounter=2.2.0") +source=("https://github.com/ncbi/SKESA/archive/refs/tags/skesa.2.4.0_saute.1.3.0_1.tar.gz" +) +b2sums=('08b0477670a3e7751f598e903eb227e766bce91ba2e44cca1b8accbc7abff7191b3f9117e639d48f4d99c86bee3773385c25767bd755dae14d4186e8cfc264bf' +) + +prepare() { + cd $srcdir/SKESA-skesa.2.4.0_saute.1.3.0_1/ + # fix root issue in package + # patch -Np0 -i "$srcdir/Makefile.patch" +} + +build() { + cd $srcdir/SKESA-skesa.2.4.0_saute.1.3.0_1/ + + make skesa + make saute + make saute_prot + make gfa_connector + make kmercounter +} + +package() { + cd $srcdir/SKESA-skesa.2.4.0_saute.1.3.0_1/ + + install -Dm755 -t "$pkgdir/usr/bin" skesa + install -Dm755 -t "$pkgdir/usr/bin" saute + install -Dm755 -t "$pkgdir/usr/bin" saute_prot + install -Dm755 -t "$pkgdir/usr/bin" gfa_connector + install -Dm755 -t "$pkgdir/usr/bin" kmercounter + install -Dm644 -t "${pkgdir}/usr/share/licenses/skesa" LICENSE +} |