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| author | cev | 2016-04-21 22:58:52 -0400 |
|---|---|---|
| committer | cev | 2016-04-21 22:58:52 -0400 |
| commit | a1a837809aa9abc838b5ef6f2c63d1a4b5b88d57 (patch) | |
| tree | f527e7436cad8f65b070c1e10cb0a462ca88991c | |
| download | aur-a1a837809aa9abc838b5ef6f2c63d1a4b5b88d57.tar.gz | |
Initial commit
| -rw-r--r-- | .SRCINFO | 15 | ||||
| -rw-r--r-- | PKGBUILD | 31 | ||||
| -rw-r--r-- | makefile.patch | 18 |
3 files changed, 64 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..e67d79d996c3 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,15 @@ +pkgbase = skewer + pkgdesc = A fast and sensitive adapter trimmer for illumina paired-end sequences + pkgver = 0.2.2 + pkgrel = 1 + url = https://github.com/relipmoc/skewer + arch = i686 + arch = x86_64 + license = MIT + source = https://github.com/relipmoc/skewer/archive/0.2.2.tar.gz + source = makefile.patch + sha1sums = 110d99ccee1e420c06b0848a9281a5b509aa32bd + sha1sums = 8041ecd529da1b6fe2233af9144e236464486c7d + +pkgname = skewer + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..14dc71cb0765 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,31 @@ +# Maintainer: Charles Vejnar <ce@vejnar.org> + +pkgname=skewer +pkgver=0.2.2 +pkgrel=1 +pkgdesc="A fast and sensitive adapter trimmer for illumina paired-end sequences" +arch=("i686" "x86_64") +url="https://github.com/relipmoc/skewer" +license=("MIT") +source=("https://github.com/relipmoc/skewer/archive/${pkgver}.tar.gz" + "makefile.patch") +sha1sums=("110d99ccee1e420c06b0848a9281a5b509aa32bd" + "8041ecd529da1b6fe2233af9144e236464486c7d") + +prepare() { + cd "${srcdir}/${pkgname}-${pkgver}" + + patch -p1 -i "${srcdir}/makefile.patch" +} + +build() { + cd "${srcdir}/${pkgname}-${pkgver}" + + make +} + +package() { + cd "${srcdir}/${pkgname}-${pkgver}" + + install -Dm755 skewer "$pkgdir/usr/bin/skewer" +} diff --git a/makefile.patch b/makefile.patch new file mode 100644 index 000000000000..d4e1c33b674e --- /dev/null +++ b/makefile.patch @@ -0,0 +1,18 @@ +--- a/Makefile ++++ b/Makefile +@@ -1,6 +1,5 @@ + CXX=g++ + DEBUG?=0 +-CXXFLAGS?=-c + LDFLAGS=-pthread + LDLIBS=-lrt + ifneq ($(OS), Windows_NT) +@@ -32,7 +31,7 @@ $(EXECUTABLE):$(OBJECTS) + $(CXX) $(LDFLAGS) $(OBJECTS) -o $@ $(LDLIBS) + + .cpp.o: +- $(CXX) $(CXXFLAGS) $< -o $@ ++ $(CXX) $(CXXFLAGS) -c $< -o $@ + + $(SRC)/main.o: $(SRC)/parameter.h $(SRC)/matrix.h $(SRC)/fastq.h $(SRC)/common.h + $(SRC)/parameter.o: $(SRC)/parameter.h $(SRC)/fastq.h $(SRC)/common.h |