add smartdenovo

2 files changed, 53 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..b7b313bfaee4
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,13 @@
+pkgbase = smartdenovo
+	pkgdesc = About Ultra-fast de novo assembler using long noisy reads
+	pkgver = r80.8488de9
+	pkgrel = 1
+	url = https://github.com/ruanjue/smartdenovo
+	arch = x86_64
+	license = GPL
+	makedepends = git
+	makedepends = make
+	source = git+https://github.com/ruanjue/smartdenovo.git
+	sha256sums = SKIP
+
+pkgname = smartdenovo
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..9986408a7f78
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,40 @@
+# Maintainer: Guoyi
+pkgname=smartdenovo
+pkgver=r80.8488de9
+pkgrel=1
+pkgdesc="About Ultra-fast de novo assembler using long noisy reads"
+arch=('x86_64')
+url="https://github.com/ruanjue/smartdenovo"
+license=('GPL')
+depends=()
+makedepends=('git' 'make')
+optdepends=()
+source=(git+https://github.com/ruanjue/smartdenovo.git)
+sha256sums=('SKIP')
+pkgver() {
+    cd "${srcdir}/${pkgname}"
+    #git describe --long --tags | sed 's/-/+/g' # latest+0+g844215a
+    printf "r%s.%s" "$(git rev-list --count HEAD)" "$(git rev-parse --short HEAD)"
+}
+build() {
+  cd "${pkgname}"
+  make
+}
+
+package() {
+  cd "${pkgname}"
+  
+  install -Dm 755 pairaln $pkgdir/usr/bin/pairaln
+  install -Dm 755 wtclp $pkgdir/usr/bin/wtclp
+  install -Dm 755 wtcns $pkgdir/usr/bin/wtcns
+  install -Dm 755 wtcyc $pkgdir/usr/bin/wtcyc
+  install -Dm 755 wtext $pkgdir/usr/bin/wtext
+  install -Dm 755 wtgbo $pkgdir/usr/bin/wtgbo
+  install -Dm 755 wtlay $pkgdir/usr/bin/wtlay
+  install -Dm 755 wtmer $pkgdir/usr/bin/wtmer
+  install -Dm 755 wtmsa $pkgdir/usr/bin/wtmsa
+  install -Dm 755 wtobt $pkgdir/usr/bin/wtobt
+  install -Dm 755 wtpre $pkgdir/usr/bin/wtpre
+  install -Dm 755 wtzmo $pkgdir/usr/bin/wtzmo
+
+}