SNAP aligner v0.15.r199.ea6690f

2 files changed, 64 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..749d58bb991a
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,19 @@
+pkgbase = snap-dna-git
+	pkgdesc = Scalable Nucleotide Alignment Program
+	pkgver = v0.15.r199.ea6690f
+	pkgrel = 1
+	url = http://snap.cs.berkeley.edu/
+	arch = i686
+	arch = x86_64
+	arch = armv7h
+	license = apache
+	makedepends = git
+	depends = zlib
+	depends = gcc-libs
+	provides = snap-dna
+	conflicts = snap-dna
+	source = snap-dna::git+https://github.com/amplab/snap
+	md5sums = SKIP
+
+pkgname = snap-dna-git
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..cb7d7bdc1b4f
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,45 @@
+# Maintainer: Joshua Haase <hahj87@gmail.com>
+pkgname=snap-dna-git
+pkgver=v0.15.r199.ea6690f
+pkgrel=1
+pkgdesc="Scalable Nucleotide Alignment Program"
+arch=('i686' 'x86_64' 'armv7h')
+url="http://snap.cs.berkeley.edu/"
+license=('apache')
+groups=()
+depends=('zlib' 'gcc-libs')
+makedepends=('git')
+provides=("${pkgname%-git}")
+conflicts=("${pkgname%-git}")
+replaces=()
+backup=()
+options=()
+install=
+source=("${pkgname%-git}::git+https://github.com/amplab/snap")
+noextract=()
+md5sums=('SKIP')
+
+pkgver() {
+	cd "$srcdir/${pkgname%-git}"
+	printf "%s" "$(git describe --tags | sed 's/\([^-]*-\)g/r\1/;s/-/./g')"
+}
+
+build() {
+	cd "$srcdir/${pkgname%-git}"
+	make
+}
+
+check() {
+	cd "$srcdir/${pkgname%-git}"
+	./unit_test
+}
+
+package() {
+	cd "$srcdir/${pkgname%-git}"
+	install -m 0755 -d "$pkgdir/usr/bin"
+	install -m 0755 snap-aligner SNAPCommand "$pkgdir/usr/bin"
+	install -m 0755 -d "$pkgdir/usr/lib/${pkgname%-git}"
+	install -m 0755 unit_tests "$pkgdir/usr/lib/${pkgname%-git}"
+	install -m 0755 -d "$pkgdir/usr/share/licenses/${pkgname}"
+	install -m 0644 LICENSE COPYING "$pkgdir/usr/share/licenses/${pkgname}"
+}