diff options
| author | Christian Krause | 2015-06-13 11:57:30 +0200 |
|---|---|---|
| committer | Christian Krause | 2015-06-13 11:57:30 +0200 |
| commit | 55fe77d55020b9396f54512ce91dabab6a1def1e (patch) | |
| tree | 8191b3b8019b1b1dfcb90d4f1bf084467fe107bf | |
| download | aur-55fe77d55020b9396f54512ce91dabab6a1def1e.tar.gz | |
Initial import
| -rw-r--r-- | .SRCINFO | 14 | ||||
| -rw-r--r-- | PKGBUILD | 38 |
2 files changed, 52 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..7e74c420910c --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,14 @@ +pkgbase = soapdenovo-trans + pkgdesc = de novo transcriptome assembler + pkgver = 1.04 + pkgrel = 1 + url = http://soap.genomics.org.cn/SOAPdenovo-Trans.html + arch = i686 + arch = x86_64 + license = GPL3 + depends = zlib + source = soapdenovo-trans-1.04.zip::http://downloads.sourceforge.net/project/soapdenovotrans/SOAPdenovo-Trans/src/v1.04/SOAPdenovo-Trans-src-v1.04.zip + md5sums = be5fc908051bffd95a9499a497ccd3fa + +pkgname = soapdenovo-trans + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..18af12b43a18 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,38 @@ +# Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com> + +pkgname=soapdenovo-trans +pkgver=1.04 +pkgrel=1 +pkgdesc="de novo transcriptome assembler" +arch=('i686' 'x86_64') +url="http://soap.genomics.org.cn/SOAPdenovo-Trans.html" +license=('GPL3') +depends=('zlib') +source=("$pkgname-$pkgver.zip::http://downloads.sourceforge.net/project/soapdenovotrans/SOAPdenovo-Trans/src/v$pkgver/SOAPdenovo-Trans-src-v$pkgver.zip") +md5sums=('be5fc908051bffd95a9499a497ccd3fa') + +prepare() { + cd $srcdir/SOAPdenovo-Trans-src-v$pkgver/src + + sed -e 's|-static||' \ + -e 's|clean SOAPdenovo|SOAPdenovo|' \ + -i Makefile +} + +build() { + cd $srcdir/SOAPdenovo-Trans-src-v$pkgver/src + + make + rm -f *.o + make 63mer=1 SOAPdenovo + rm -f *.o + make 127mer=1 SOAPdenovo +} + +package() { + cd $srcdir/SOAPdenovo-Trans-src-v$pkgver + + for i in SOAPdenovo-Trans-127mer SOAPdenovo-Trans-63mer SOAPdenovo-Trans-31mer ; do + install -Dm755 $i $pkgdir/usr/bin/$i + done +} |