diff options
| author | Saulius Lukauskas | 2015-08-05 11:42:46 +0100 |
|---|---|---|
| committer | Saulius Lukauskas | 2015-08-05 11:42:46 +0100 |
| commit | d2a86d94d5aa9384fb08610d3f1b938dfc572906 (patch) | |
| tree | 8f83a757347f58e54f9790724e2b1d0a1032f20e | |
| download | aur-d2a86d94d5aa9384fb08610d3f1b938dfc572906.tar.gz | |
initial import, and update to 2.5.2
| -rw-r--r-- | .SRCINFO | 18 | ||||
| -rw-r--r-- | PKGBUILD | 28 |
2 files changed, 46 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..74c6414e8697 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,18 @@ +pkgbase = sratoolkit + pkgdesc = A toolkit from NCBI to download SRA data files and reference sequences and to do file format conversions + pkgver = 2.5.2 + pkgrel = 1 + url = http://www.ncbi.nlm.nih.gov/books/NBK158900/ + arch = x86_64 + groups = sequence_analysis + license = custom + depends = libxml2 + depends = gcc-libs-multilib + depends = fuse + source = http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.5.2/sratoolkit.2.5.2-ubuntu64.tar.gz + source = https://raw.githubusercontent.com/ncbi/sra-tools/master/LICENSE + sha1sums = 30cf9c8766c9809271de661d83dbd9e15328fef7 + sha1sums = 189d29edf32eeec2cf10f5d43b3533207f3f3e87 + +pkgname = sratoolkit + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..f0f29ac41126 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,28 @@ +# Maintainer: Sauliusl <luksaulius[at]gmail[dotcom]> +pkgname=sratoolkit +pkgver=2.5.2 +pkgrel=1 +pkgdesc="A toolkit from NCBI to download SRA data files and reference sequences and to do file format conversions" +arch=('x86_64') +url="http://www.ncbi.nlm.nih.gov/books/NBK158900/" +license=('custom') +groups=('sequence_analysis') +depends=('libxml2' 'gcc-libs-multilib' 'fuse') +source=("http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/$pkgver/sratoolkit.$pkgver-ubuntu64.tar.gz" + "https://raw.githubusercontent.com/ncbi/sra-tools/master/LICENSE") + +sha1sums=('30cf9c8766c9809271de661d83dbd9e15328fef7' + '189d29edf32eeec2cf10f5d43b3533207f3f3e87') + +package() { + install -d ${pkgdir}/usr/bin + install -d ${pkgdir}/usr/share/doc/${pkgname} + install -d ${pkgdir}/usr/share/doc/${pkgname}/example/perl + + cp -r $srcdir/sratoolkit.$pkgver-ubuntu64/bin/* ${pkgdir}/usr/bin/ + install -Dm755 $srcdir/sratoolkit.$pkgver-ubuntu64/example/perl/* ${pkgdir}/usr/share/doc/${pkgname}/example/perl/ + + install -Dm644 $srcdir/sratoolkit.$pkgver-ubuntu64/README* ${pkgdir}/usr/share/doc/${pkgname} + + install -Dm644 $srcdir/LICENSE ${pkgdir}/usr/share/licenses/${pkgname} +} |