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| author | Josh Marshall | 2018-03-22 16:36:14 -0400 |
|---|---|---|
| committer | Josh Marshall | 2018-03-22 16:36:14 -0400 |
| commit | 343d8ebf93db2b83b19729bbcd67c8a7a693a7a6 (patch) | |
| tree | a12b56a8ad58e2c91d807dc9425a1f65198d4c4f | |
| download | aur-343d8ebf93db2b83b19729bbcd67c8a7a693a7a6.tar.gz | |
First commit of TIGRFAM, data files used to help identify some proteins.
| -rw-r--r-- | .SRCINFO | 28 | ||||
| -rw-r--r-- | .gitignore | 11 | ||||
| -rw-r--r-- | PKGBUILD | 39 |
3 files changed, 78 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..815776638187 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,28 @@ +pkgbase = tigrfam + pkgdesc = TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins. + pkgver = 15.0 + pkgrel = 1 + url = ftp://ftp.jcvi.org + arch = any + license = custom + makedepends = bash + depends = hmmer + source = ftp://ftp.jcvi.org/pub/data/TIGRFAMs/TIGRFAMs_15.0_HMM.LIB.gz + source = ftp://ftp.jcvi.org/pub/data/TIGRFAMs/TIGRFAMs_15.0_HMM.tar.gz + source = ftp://ftp.jcvi.org/pub/data/TIGRFAMs/TIGRFAMs_15.0_INFO.tar.gz + source = ftp://ftp.jcvi.org/pub/data/TIGRFAMs/TIGRFAMs_15.0_SEED.tar.gz + source = ftp://ftp.jcvi.org/pub/data/TIGRFAMs/TIGRFAMS_GO_LINK + source = ftp://ftp.jcvi.org/pub/data/TIGRFAMs/TIGRFAMS_ROLE_LINK + source = ftp://ftp.jcvi.org/pub/data/TIGRFAMs/TIGR_ROLE_NAMES + source = ftp://ftp.jcvi.org/pub/data/TIGRFAMs/COPYRIGHT + sha512sums = 477b069e03fcf3340df0fea139b76ef377d39775b161707dc2a4d768be6e810a8be9d691f033c636a8c83e5b887b33e399ac52db229881a0c1bad4ce0d18badd + sha512sums = c2ef205cb1a817de28ea2277e42719d9762e56583ffc6a66843a79c38f9e5dd8ce530b86d778d622065a123bdb7f7b07127b0c852e96696a3fa3aac9200929f0 + sha512sums = 05ffcc22e836600d08002b51b53a6e792431e0028514fe18b721f8e7eae3b9e5b90c55ca5fb8d0a52c0ffccb383186d7cb4e92f8df4180f287e0ee6bd6b4636d + sha512sums = c3d6916857ff35e60c1b133d6b4ee3579bfdc1546003a7b9dc7f5aa76404b470a67ea723b64deb44322e1b94e073de3bf1015b142bd8fc02926ecdf4d746c9ff + sha512sums = 64a7bf8978485476fff3a6bf99edb7366361b3b5eaf809694748f1dfb2246eec0431c125cca2d92f907d9ce5098fe2c98ab7a9f4b5f9a27a01b4aacb178eaa8e + sha512sums = 446b04811609d97f5650b6cc5de7e354ffef339b4a1351f535f231e371735d2ea1876890b2fa69bde5eae37c1ae6e138799783f1f0a33c5aba4d66d41f670448 + sha512sums = c4f9f4a49367b5691cfebca9abe852e151f4295995d6839ac9eff102a47c38b2a8cd6e830a0f0b7dce8c5964687f6646230a9dbcc0bb1790e5e017e574b836e1 + sha512sums = a72835ce81ec7d289df9b2c17b6618bb4a21d9b2f01d0bf7135510e3fdbb2cafdbb87cdea8c2a74e9e2b8f48e156823f9231ca1a704b7a15c1d60277d60b3861 + +pkgname = tigrfam + diff --git a/.gitignore b/.gitignore new file mode 100644 index 000000000000..3151c8935a7f --- /dev/null +++ b/.gitignore @@ -0,0 +1,11 @@ +COPYRIGHT +*.pkg.tar.xz +TIGRFAMs_15.0_HMM.tar.gz +TIGRFAMs_15.0_SEED.tar.gz +TIGRFAMS_ROLE_LINK +pkg +src +TIGRFAMs_15.0_HMM.LIB.gz +TIGRFAMs_15.0_INFO.tar.gz +TIGRFAMS_GO_LINK +TIGR_ROLE_NAMES diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..7f45d270a2b8 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,39 @@ +# Maintainer: Josh Marshall <jrmarsha@mtu.edu> + +pkgname=tigrfam +pkgver=15.0 +pkgrel=1 +pkgdesc='TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins.' +arch=('any') +license=('custom') +url="ftp://ftp.jcvi.org" +depends=('hmmer') +makedepends=('bash') +provides=() +path="/pub/data/TIGRFAMs" +source=( + "$url$path/TIGRFAMs_15.0_HMM.LIB.gz" + "$url$path/TIGRFAMs_15.0_HMM.tar.gz" + "$url$path/TIGRFAMs_15.0_INFO.tar.gz" + "$url$path/TIGRFAMs_15.0_SEED.tar.gz" + "$url$path/TIGRFAMS_GO_LINK" + "$url$path/TIGRFAMS_ROLE_LINK" + "$url$path/TIGR_ROLE_NAMES" + "$url$path/COPYRIGHT" + ) +sha512sums=( +'477b069e03fcf3340df0fea139b76ef377d39775b161707dc2a4d768be6e810a8be9d691f033c636a8c83e5b887b33e399ac52db229881a0c1bad4ce0d18badd' +'c2ef205cb1a817de28ea2277e42719d9762e56583ffc6a66843a79c38f9e5dd8ce530b86d778d622065a123bdb7f7b07127b0c852e96696a3fa3aac9200929f0' +'05ffcc22e836600d08002b51b53a6e792431e0028514fe18b721f8e7eae3b9e5b90c55ca5fb8d0a52c0ffccb383186d7cb4e92f8df4180f287e0ee6bd6b4636d' +'c3d6916857ff35e60c1b133d6b4ee3579bfdc1546003a7b9dc7f5aa76404b470a67ea723b64deb44322e1b94e073de3bf1015b142bd8fc02926ecdf4d746c9ff' +'64a7bf8978485476fff3a6bf99edb7366361b3b5eaf809694748f1dfb2246eec0431c125cca2d92f907d9ce5098fe2c98ab7a9f4b5f9a27a01b4aacb178eaa8e' +'446b04811609d97f5650b6cc5de7e354ffef339b4a1351f535f231e371735d2ea1876890b2fa69bde5eae37c1ae6e138799783f1f0a33c5aba4d66d41f670448' +'c4f9f4a49367b5691cfebca9abe852e151f4295995d6839ac9eff102a47c38b2a8cd6e830a0f0b7dce8c5964687f6646230a9dbcc0bb1790e5e017e574b836e1' +'a72835ce81ec7d289df9b2c17b6618bb4a21d9b2f01d0bf7135510e3fdbb2cafdbb87cdea8c2a74e9e2b8f48e156823f9231ca1a704b7a15c1d60277d60b3861' +) + +package() { + install -Dm644 COPYRIGHT "$pkgdir/usr/share/licenses/$pkgname/LICENSE" + mkdir -p "$pkgdir/opt/TIGRFAM/" + find * -maxdepth 0 -regex '.*\.gz' -prune -o -print0 | xargs -0 -i cp -f {} "$pkgdir/opt/TIGRFAM/" +} |