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author | Alexander Minges | 2015-07-06 22:30:40 +0200 |
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committer | Alexander Minges | 2015-07-06 22:30:40 +0200 |
commit | fda14d56c555dc3280e5d219b1b1b813a37f4858 (patch) | |
tree | 2411a8d22e0999d9b8482227e0579e2e4cde56be | |
download | aur-fda14d56c555dc3280e5d219b1b1b813a37f4858.tar.gz |
Initital import
-rw-r--r-- | .SRCINFO | 16 | ||||
-rw-r--r-- | LICENSE | 16 | ||||
-rw-r--r-- | PKGBUILD | 34 |
3 files changed, 66 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..7f1d6b148335 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,16 @@ +pkgbase = tmtools + pkgdesc = TM-align is a computer algorithm for protein structure alignment using dynamic programming and TM-score rotation matrix + pkgver = 20140601 + pkgrel = 1 + url = http://zhanglab.ccmb.med.umich.edu/TM-align/ + arch = x86_64 + arch = i686 + license = custom + makedepends = gcc-fortran + source = http://zhanglab.ccmb.med.umich.edu/TM-align/TMtools20140601.tar.gz + source = LICENSE + sha256sums = 5032f7ab1824c8b2191b4a3667e1405feb6ccf7c900f57632aa506fff8ec1bf5 + sha256sums = 6702b261d43b8ce84af0aecabb2ff3c8a4187204f65b0b60c8d5fb5b9f24961b + +pkgname = tmtools + diff --git a/LICENSE b/LICENSE new file mode 100644 index 000000000000..ffa0230491f7 --- /dev/null +++ b/LICENSE @@ -0,0 +1,16 @@ +This program is to identify the best alignment of two protein +structures that gives the highest TM-score. Input structures must +be in the PDB format. By default, TM-score is normalized by the +second protein. Users can obtain a brief instruction by simply +running the program without arguments. For comments/suggestions, +please contact email: zhng@umich.edu. + +Reference to cite: +Yang Zhang, Jeffrey Skolnick, Nucl. Acid Res. 2005 33: 2303-9 + +Permission to use, copy, modify, and distribute this program for +any purpose, with or without fee, is hereby granted, provided that +the notices on the head, the reference information, and this +copyright notice appear in all copies or substantial portions of +the Software. It is provided "as is" without express or implied +warranty.
\ No newline at end of file diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..ecd9c0993af1 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,34 @@ +# Maintainer: Athemis <alexander.minges[at]googlemail[dot]com> +pkgname=tmtools +_pkgname=TMtools +pkgver=20140601 +pkgrel=1 +pkgdesc="TM-align is a computer algorithm for protein structure alignment using dynamic programming and TM-score rotation matrix" +url="http://zhanglab.ccmb.med.umich.edu/TM-align/" +arch=('x86_64' 'i686') +license=('custom') +makedepends=('gcc-fortran') +source=("http://zhanglab.ccmb.med.umich.edu/TM-align/${_pkgname}${pkgver}.tar.gz" + "LICENSE") + +sha256sums=('5032f7ab1824c8b2191b4a3667e1405feb6ccf7c900f57632aa506fff8ec1bf5' + '6702b261d43b8ce84af0aecabb2ff3c8a4187204f65b0b60c8d5fb5b9f24961b') + +build() { + cd "${srcdir}" + rm TMalign + rm TMscore + gfortran -march=native -O3 -pipe -ffast-math -lm -o TMalign TMalign.f + gfortran -march=native -O3 -pipe -ffast-math -lm -o TMscore TMscore.f +} + +package() { + cd "${srcdir}" + install -d ${pkgdir}/usr/bin + install -d ${pkgdir}/usr/share/licenses/${pkgname} + install -Dm755 TMalign ${pkgdir}/usr/bin + install -Dm755 TMscore ${pkgdir}/usr/bin + install -Dm644 LICENSE ${pkgdir}/usr/share/licenses/${pkgname} +} + +# vim:set ts=2 sw=2 et: |