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| author | Christian Krause | 2015-06-30 13:24:18 +0200 |
|---|---|---|
| committer | Christian Krause | 2015-06-30 13:24:18 +0200 |
| commit | 4b71245ddb7306ebc430f334b6b6f132fc07273f (patch) | |
| tree | ebebc4f7a66c654fa3b33d555f6955702326c80a | |
| parent | 1c382691668cd73b5560e19e01a76737a8c71a21 (diff) | |
| download | aur-4b71245ddb7306ebc430f334b6b6f132fc07273f.tar.gz | |
tophat-2.1.0-1
| -rw-r--r-- | .SRCINFO | 7 | ||||
| -rw-r--r-- | PKGBUILD | 8 |
2 files changed, 7 insertions, 8 deletions
@@ -1,18 +1,17 @@ pkgbase = tophat pkgdesc = fast splice junction mapper for RNA-Seq reads - pkgver = 2.0.14 + pkgver = 2.1.0 pkgrel = 1 url = http://ccb.jhu.edu/software/tophat/index.shtml arch = x86_64 arch = i686 license = PerlArtistic makedepends = boost - makedepends = clang depends = boost-libs depends = bowtie2 depends = python2 - source = http://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.14.tar.gz - md5sums = 509f72082c98f116131e976681578a9f + source = http://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.0.tar.gz + md5sums = 1ace6e96fa692af6ed885bad5fe7c4d7 pkgname = tophat @@ -1,21 +1,21 @@ # Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com> pkgname=tophat -pkgver=2.0.14 +pkgver=2.1.0 pkgrel=1 pkgdesc="fast splice junction mapper for RNA-Seq reads" arch=('x86_64' 'i686') url="http://ccb.jhu.edu/software/tophat/index.shtml" license=('PerlArtistic') depends=('boost-libs' 'bowtie2' 'python2') -makedepends=('boost' 'clang') +makedepends=('boost') source=("http://ccb.jhu.edu/software/tophat/downloads/tophat-$pkgver.tar.gz") -md5sums=('509f72082c98f116131e976681578a9f') +md5sums=('1ace6e96fa692af6ed885bad5fe7c4d7') prepare() { cd $srcdir/$pkgname-$pkgver - sed -e 's|-Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized||' \ + sed -e 's|-gdwarf-2||' \ -e '/define.*esyscmd/d' \ -e 's/svnversion/Unversioned directory/' \ -i configure.ac |