fix exec script

2 files changed, 10 insertions, 8 deletions

diff --git a/.SRCINFO b/.SRCINFO
index ef6e6afefa6e..d22600d9f8ae 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,13 +1,15 @@
 pkgbase = trimmomatic
 	pkgdesc = Trimmomatic: A flexible read trimming tool for Illumina NGS data
 	pkgver = 0.36
-	pkgrel = 1
+	pkgrel = 2
 	url = http://www.usadellab.org/cms/?page=trimmomatic
 	arch = any
 	license = GPL3
 	depends = java-environment>=6
 	source = http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.36.zip
+	source = trimmomatic
 	md5sums = 8549130d86b6f0382b1a71a2eb45de39
+	md5sums = 688d7880e8fb1d46f7a35ed385d60acd
 
 pkgname = trimmomatic
 
diff --git a/PKGBUILD b/PKGBUILD
index 3c61785b93c9..e79bf8722626 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,14 +1,17 @@
 # Maintainer: ZJLIN <zjin841126@gmail.com>
 pkgname=trimmomatic
 pkgver=0.36
-pkgrel=1
+pkgrel=2
 pkgdesc='Trimmomatic: A flexible read trimming tool for Illumina NGS data'
 arch=('any')
 url="http://www.usadellab.org/cms/?page=trimmomatic"
 license=('GPL3')
 depends=('java-environment>=6')
-source=("http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-$pkgver.zip")
-md5sums=('8549130d86b6f0382b1a71a2eb45de39')
+source=("http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-$pkgver.zip"
+        "trimmomatic"
+        )
+md5sums=('8549130d86b6f0382b1a71a2eb45de39'
+         '688d7880e8fb1d46f7a35ed385d60acd')
 
 package() {
     mkdir $pkgdir/opt/
@@ -16,8 +19,5 @@ package() {
     cp -r $srcdir/Trimmomatic/ $pkgdir/opt/
 
     mkdir -p "${pkgdir}/usr/bin/"
-    execmd=("exec java -jar /opt/Trimmomatic/trimmomatic-$pkgver.jar"' "$@"')
-    echo $execmd > $pkgdir/opt/Trimmomatic/trimmomatic
-    chmod 755 $pkgdir/opt/Trimmomatic/trimmomatic
-    ln -s "/opt/Trimmomatic/trimmomatic" "${pkgdir}/usr/bin"
+    install $srcdir/trimmomatic $pkgdir/usr/bin
 }