First commit with PKGBUILD and .SRCINFO

2 files changed, 57 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..fe1d2790f2d8
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,18 @@
+pkgbase = verifybamid
+	pkgdesc = Bioinformatics tool that verifies if reads in a particular file match previously known genotypes for an individual (or group of individuals)
+	pkgver = 1.1.3
+	pkgrel = 1
+	url = https://genome.sph.umich.edu/wiki/VerifyBamID
+	arch = x86_64
+	license = GPL3
+	makedepends = gcc-libs
+	makedepends = zlib
+	provides = verifybamid
+	conflicts = verifybamid
+	source = https://github.com/statgen/verifyBamID/archive/v1.1.3.tar.gz
+	source = libStatGen::git+https://github.com/statgen/libStatGen.git#commit=9db9c23e176a6ce6f421a3c21ccadedca892ac0c
+	md5sums = d542ca13e68b51e976d7f139ddee8cf5
+	md5sums = SKIP
+
+pkgname = verifybamid
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..0d8b87ecba92
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,39 @@
+# Maintainer: Clint Valentine <valentine.clint@gmail.com>
+
+pkgname=verifybamid
+pkgver=1.1.3
+pkgrel=1
+pkgdesc="Bioinformatics tool that verifies if reads in a particular file match previously known genotypes for an individual (or group of individuals)"
+arch=('x86_64')
+url="https://genome.sph.umich.edu/wiki/VerifyBamID"
+license=('GPL3')
+depends=()
+makedepends=('gcc-libs' 'zlib')
+provides=('verifybamid')
+conflicts=('verifybamid')
+source=(
+  "https://github.com/statgen/verifyBamID/archive/v${pkgver}.tar.gz"
+  "libStatGen::git+https://github.com/statgen/libStatGen.git#commit=9db9c23e176a6ce6f421a3c21ccadedca892ac0c")
+md5sums=('d542ca13e68b51e976d7f139ddee8cf5' 'SKIP')
+
+build() {
+  cd "${srcdir}/verifyBamID-${pkgver}"
+
+  make
+}
+
+check() {
+  cd "${srcdir}/verifyBamID-${pkgver}"
+
+  make test
+}
+
+package() {
+  cd "${srcdir}/verifyBamID-${pkgver}"
+
+  install -Dm775 "bin/verifyBamID" "${pkgdir}/usr/bin/verifyBamID"
+  install -Dm644 "copyrights/LICENSE.txt" "${pkgdir}/usr/share/licenses/verifyBamID-${pkgver}/LICENSE.txt"
+  install -Dm644 "copyrights/COPYING" "${pkgdir}/usr/share/licenses/verifyBamID-${pkgver}/COPYING"
+  install -Dm644 "src/base/LICENSE" "${pkgdir}/usr/share/licenses/verifyBamID-${pkgver}/LICENSE_Chromium"
+}
+