diff options
| author | Allen | 2017-03-17 23:38:06 +0800 |
|---|---|---|
| committer | Allen | 2017-03-17 23:38:06 +0800 |
| commit | 3d62ea87b52971029e12cf8412391388ae470dd6 (patch) | |
| tree | b4369fc9a9b715b879bfbabd0dbd4b299f137dfe | |
| download | aur-3d62ea87b52971029e12cf8412391388ae470dd6.tar.gz | |
Init commit
| -rw-r--r-- | .SRCINFO | 14 | ||||
| -rw-r--r-- | PKGBUILD | 27 |
2 files changed, 41 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..a0f5fd7db56d --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,14 @@ +pkgbase = weeder + pkgdesc = Motif (transcription factor binding sites) discovery in sequences from coregulated genes of a single species + pkgver = 1.4.2 + pkgrel = 4 + url = http://159.149.160.51/modtools/ + arch = i686 + arch = x86_64 + license = GPL3 + depends = sh + source = http://159.149.160.51/modtools/downloads/weeder1.4.2.tar.gz + sha256sums = 17488fcd98d18012141e42f2e68fd71bec8cbbcae109a3a553514a179e30365a + +pkgname = weeder + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..e80bc6ab1000 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,27 @@ +# Maintainer: allencch <allencch at hotmail dot com> +pkgname=weeder +pkgver=1.4.2 +pkgrel=4 +pkgdesc="Motif (transcription factor binding sites) discovery in sequences from coregulated genes of a single species" +arch=('i686' 'x86_64') +url="http://159.149.160.51/modtools/" +license=('GPL3') +depends=("sh") +source=("http://159.149.160.51/modtools/downloads/${pkgname}${pkgver}.tar.gz") +sha256sums=('17488fcd98d18012141e42f2e68fd71bec8cbbcae109a3a553514a179e30365a') + +build() { + cd "${srcdir}/Weeder${pkgver}" + sed -i "s|./FreqFiles|/opt/weeder/FreqFiles|g" "src/weederTFBS.c" "src/weederlauncher.c" + sed -i "s|./adviser.out|adviser.out|g" "src/weederlauncher.c" + sed -i "s|./weederTFBS.out|weederTFBS.out|g" "src/weederlauncher.c" + ./compileall +} + +package() { + mkdir -p "${pkgdir}/usr/bin" + mkdir -p "${pkgdir}/opt/weeder" + cd "${srcdir}/Weeder${pkgver}" + install -m755 *.out "${pkgdir}/usr/bin" + cp -r FreqFiles "${pkgdir}/opt/weeder" +} |