Initial version of X3DNA package

2 files changed, 44 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..a2d49bee4637
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,16 @@
+pkgbase = x3dna
+	pkgdesc = 3DNA is a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid-containing structures. Please see: http://forum.x3dna.org/site-announcements/download-instructions/
+	pkgver = 2.3_2016apr02
+	pkgrel = 1
+	url = http://x3dna.org/
+	arch = i686
+	arch = x86_64
+	license = custom
+	depends = ruby
+	source_i686 = http://x3dna.bio.columbia.edu/downloads/v2.3/x3dna-v2.3-linux-32bit.tar.gz
+	md5sums_i686 = 71874b399db7a24f5025b654493d77e2
+	source_x86_64 = http://x3dna.bio.columbia.edu/downloads/v2.3/x3dna-v2.3-linux-64bit.tar.gz
+	md5sums_x86_64 = cc65b97a27d38d7a97cb86aaa6e6d152
+
+pkgname = x3dna
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..d490149752ff
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,28 @@
+# Maintainer: Tomasz Zok <tomasz.zok [at] gmail.com>
+pkgname=x3dna
+_pkgver=2.3
+pkgver=${_pkgver}_2016apr02
+pkgrel=1
+pkgdesc="3DNA is a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid-containing structures. Please see: http://forum.x3dna.org/site-announcements/download-instructions/"
+arch=('i686' 'x86_64')
+url="http://x3dna.org/"
+license=('custom')
+depends=('ruby')
+source_i686=("http://x3dna.bio.columbia.edu/downloads/v${_pkgver}/${pkgname}-v${_pkgver}-linux-32bit.tar.gz")
+md5sums_i686=('71874b399db7a24f5025b654493d77e2')
+source_x86_64=("http://x3dna.bio.columbia.edu/downloads/v${_pkgver}/${pkgname}-v${_pkgver}-linux-64bit.tar.gz")
+md5sums_x86_64=('cc65b97a27d38d7a97cb86aaa6e6d152')
+
+package() {
+    cd ${pkgname}-v${_pkgver}/
+    install -d ${pkgdir}/etc/profile.d/
+    install -d ${pkgdir}/opt/${pkgname}-v${_pkgver}/
+    install -d ${pkgdir}/usr/bin/
+
+    # fix conflict with hunspell package
+    mv bin/analyze bin/analyze-x3dna
+
+    install bin/* ${pkgdir}/usr/bin/
+    cp -R config doc examples fiber lib np_recipes perl_scripts ${pkgdir}/opt/${pkgname}-v${_pkgver}/
+    echo "export X3DNA=/opt/${pkgname}-v${_pkgver}" > "$pkgdir/etc/profile.d/x3dna.sh"
+}