diff options
| author | Lev Levitsky | 2015-06-14 16:24:54 +0300 |
|---|---|---|
| committer | Lev Levitsky | 2015-06-14 16:24:54 +0300 |
| commit | 5a3c908f023718e3a29cab86682dcc2794cfc6fa (patch) | |
| tree | 65baedba38d18834f823e97ecf11ac7b9c06b956 | |
| download | aur-5a3c908f023718e3a29cab86682dcc2794cfc6fa.tar.gz | |
Initial import
| -rw-r--r-- | .SRCINFO | 17 | ||||
| -rw-r--r-- | PKGBUILD | 19 | ||||
| -rwxr-xr-x | xtandem.sh | 1 |
3 files changed, 37 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..922ac036a87c --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,17 @@ +# Generated by makepkg 4.2.1 +# Mon May 4 04:44:13 UTC 2015 +pkgbase = xtandem + pkgdesc = Software that can match tandem mass spectra with peptide sequences, in a process known as protein identification. + pkgver = 15.04.01.1 + pkgrel = 3 + url = http://www.thegpm.org/TANDEM/ + arch = x86_64 + license = custom + optdepends = python-pyteomics.pepxmltk: a convenient wrapper for tandem.exe and a converter to pepXML + source = ftp://ftp.thegpm.org/projects/tandem/source/tandem-linux-15-04-01-1.zip + source = xtandem.sh + md5sums = 6f40a80f58ef710607075e112abcbeac + md5sums = ddde2d73df3b72f30d5906fefaeece09 + +pkgname = xtandem + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..0ae68fbc06ad --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,19 @@ +# Maintainer: Lev Levitsky <levlev@mail.ru> +pkgname=xtandem +pkgver=15.04.01.1 +pkgrel=3 +pkgdesc="Software that can match tandem mass spectra with peptide sequences, in a process known as protein identification." +arch=('x86_64') +url="http://www.thegpm.org/TANDEM/" +license=('custom') +source=("ftp://ftp.thegpm.org/projects/tandem/source/tandem-linux-${pkgver//\./-}.zip" + "xtandem.sh") +md5sums=('6f40a80f58ef710607075e112abcbeac' + 'ddde2d73df3b72f30d5906fefaeece09') +optdepends=('python-pyteomics.pepxmltk: a convenient wrapper for tandem.exe and a converter to pepXML') +package() { + cd "tandem-linux-${pkgver//\./-}" + install -Dt $pkgdir/usr/bin bin/*.exe + install -m 644 -D LICENSE $pkgdir/usr/share/licenses/$pkgname/license.txt + install -Dt $pkgdir/etc/profile.d ../xtandem.sh +} diff --git a/xtandem.sh b/xtandem.sh new file mode 100755 index 000000000000..b6e7014188a1 --- /dev/null +++ b/xtandem.sh @@ -0,0 +1 @@ +export TANDEMEXE=tandem.exe
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