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authorBioArchLinuxBot2023-01-06 12:08:36 +0000
committerBioArchLinuxBot2023-01-06 12:08:36 +0000
commit06c19369cfaa76ab75258dff13583ff7857bcb5f (patch)
treed8dc8a2c3aef5e10817bebe3ae46b658b3b16261
parentc9093f12cf0d513b7790336f0bcf85683cf2a06c (diff)
downloadaur-06c19369cfaa76ab75258dff13583ff7857bcb5f.tar.gz
[lilac] updated to 3.0.3-3
-rw-r--r--.SRCINFO2
-rw-r--r--PKGBUILD17
2 files changed, 14 insertions, 5 deletions
diff --git a/.SRCINFO b/.SRCINFO
index dc4278fd4db6..853cd139c305 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,7 +1,7 @@
pkgbase = sra-tools
pkgdesc = A collection of tools and libraries for using data in the INSDC Sequence Read Archives
pkgver = 3.0.3
- pkgrel = 1
+ pkgrel = 3
url = https://github.com/ncbi/sra-tools
arch = x86_64
license = custom: Public Domain
diff --git a/PKGBUILD b/PKGBUILD
index 0b28a24fa2c5..7bdb0f8adf0f 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -7,7 +7,7 @@ pkgname=sra-tools
_dep=ncbi-vdb
pkgver=3.0.3
_depver=3.0.2
-pkgrel=1
+pkgrel=3
pkgdesc='A collection of tools and libraries for using data in the INSDC Sequence Read Archives'
url="https://github.com/ncbi/sra-tools"
source=("$pkgname-$pkgver.tar.gz::https://github.com/ncbi/sra-tools/archive/refs/tags/$pkgver.tar.gz"
@@ -60,16 +60,25 @@ package(){
make DESTDIR="$pkgdir" install
cp -rf ${srcdir}/"$pkgname-$pkgver"/etc "$pkgdir"
cp -rf $srcdir/$_dep-$_depver/interfaces/kfg/ncbi/etc "$pkgdir"
+
# install LICENSE file
install -Dm644 ${srcdir}/"$pkgname-$pkgver"/LICENSE -t "$pkgdir"/usr/share/licenses/sra-tools/
+
# remove empty folder
rm -Rf "$pkgdir"/usr/include/kfg/ncbi/etc/
- # remove symlinks and fix filenames
-
- find "$pkgdir"/usr/bin -type l -delete
+ # remove symlinks
+ find "$pkgdir"/usr/bin -type l -delete
+
+ # Fix filenames: remove $pkgever suffix from end of binaries
for filename in "$pkgdir"/usr/bin/*
do [ -f "$filename" ] || continue
mv "$filename" "${filename//.${pkgver}/}"
done
+
+ # Fix filenames: remove -orig suffix from end of binaries
+ for filename in "$pkgdir"/usr/bin/*
+ do [ -f "$filename" ] || continue
+ mv -n "$filename" "${filename//-orig/}"
+ done
}