add r-aucell

2 files changed, 100 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..3c8e7c607245
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,42 @@
+pkgbase = r-aucell
+	pkgdesc = AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)
+	pkgver = 1.18.1
+	pkgrel = 1
+	url = https://bioconductor.org/packages/AUCell
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-biocgenerics
+	depends = r-data.table
+	depends = r-gseabase
+	depends = r-mixtools
+	depends = r-r.utils
+	depends = r-s4vectors
+	depends = r-shiny
+	depends = r-summarizedexperiment
+	depends = r-delayedmatrixstats
+	optdepends = r-biobase
+	optdepends = r-biocstyle
+	optdepends = r-domc
+	optdepends = r-doparallel
+	optdepends = r-dorng
+	optdepends = r-dosnow
+	optdepends = r-dt
+	optdepends = r-dynamictreecut
+	optdepends = r-foreach
+	optdepends = r-geoquery
+	optdepends = r-knitr
+	optdepends = r-nmf
+	optdepends = r-plotly
+	optdepends = r-plyr
+	optdepends = r-r2html
+	optdepends = r-rbokeh
+	optdepends = r-reshape2
+	optdepends = r-rmarkdown
+	optdepends = r-rtsne
+	optdepends = r-testthat
+	optdepends = r-zoo
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/AUCell_1.18.1.tar.gz
+	sha256sums = f969bb6262af856e71b846e650f41a26e87838464670d2d50b1450ca7c3b999f
+
+pkgname = r-aucell
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..8cb5540aa992
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,58 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=AUCell
+_pkgver=1.18.1
+pkgname=r-${_pkgname,,}
+pkgver=1.18.1
+pkgrel=1
+pkgdesc="AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)"
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biocgenerics
+  r-data.table
+  r-gseabase
+  r-mixtools
+  r-r.utils
+  r-s4vectors
+  r-shiny
+  r-summarizedexperiment
+  r-delayedmatrixstats
+)
+optdepends=(
+  r-biobase
+  r-biocstyle
+  r-domc
+  r-doparallel
+  r-dorng
+  r-dosnow
+  r-dt
+  r-dynamictreecut
+  r-foreach
+  r-geoquery
+  r-knitr
+  r-nmf
+  r-plotly
+  r-plyr
+  r-r2html
+  r-rbokeh
+  r-reshape2
+  r-rmarkdown
+  r-rtsne
+  r-testthat
+  r-zoo
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('f969bb6262af856e71b846e650f41a26e87838464670d2d50b1450ca7c3b999f')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: