newpkg: bcftools-git 1.10.2.r123.gdc26549-1

2 files changed, 68 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..48b1cf7a0953
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,21 @@
+pkgbase = bcftools-git
+	pkgdesc = Tools for variant calling and manipulating VCFs and BCFs
+	pkgver = 1.10.2.r123.gdc26549
+	pkgrel = 1
+	url = https://samtools.github.io/bcftools/
+	arch = i686
+	arch = x86_64
+	license = custom
+	makedepends = git
+	depends = glibc
+	depends = gsl
+	depends = htslib
+	depends = zlib
+	optdepends = python
+	provides = bcftools
+	conflicts = bcftools
+	source = git+https://github.com/samtools/bcftools.git
+	sha256sums = SKIP
+
+pkgname = bcftools-git
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..4c7d6175b852
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,47 @@
+# Maintainer: Chocobo1 <chocobo1 AT archlinux DOT net>
+
+pkgname=bcftools-git
+pkgver=1.10.2.r123.gdc26549
+pkgrel=1
+pkgdesc="Tools for variant calling and manipulating VCFs and BCFs"
+arch=('i686' 'x86_64')
+url="https://samtools.github.io/bcftools/"
+license=('custom')
+depends=('glibc' 'gsl' 'htslib' 'zlib')
+makedepends=('git')
+optdepends=('python')
+provides=('bcftools')
+conflicts=('bcftools')
+source=("git+https://github.com/samtools/bcftools.git")
+sha256sums=('SKIP')
+
+
+pkgver() {
+  cd "bcftools"
+
+  git describe --long --tags | sed 's/^v//;s/\([^-]*-g\)/r\1/;s/-/./g'
+}
+
+build() {
+  cd "bcftools"
+
+  autoreconf -fi
+  ./configure \
+    --prefix="/usr" \
+    --with-bcf-plugin-dir=/usr/lib/bcftools \
+    --enable-libgsl
+  make
+}
+
+check() {
+  cd "bcftools"
+
+  #make check
+}
+
+package() {
+  cd "bcftools"
+
+  make DESTDIR="$pkgdir" install
+  install -Dm644 "LICENSE" -t "$pkgdir/usr/share/licenses/bcftools"
+}