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authorBioArchLinuxBot2022-04-17 15:49:52 +0000
committerBioArchLinuxBot2022-04-17 15:49:52 +0000
commit0eaac61f4d37d41ae95f3ebd0f09d56630fea88d (patch)
tree62796349d078666759a3c0b16250869214f72242
parent84313b3ce5bdf0dcd4bb573deacf2b9397a20b3c (diff)
downloadaur-0eaac61f4d37d41ae95f3ebd0f09d56630fea88d.tar.gz
[lilac] updated to 2.27.1-2
-rw-r--r--.SRCINFO10
-rw-r--r--PKGBUILD39
2 files changed, 9 insertions, 40 deletions
diff --git a/.SRCINFO b/.SRCINFO
index fb78080092e4..f8a2fefbb9c8 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,14 +1,12 @@
pkgbase = picard-tools
pkgdesc = set of tools for working with next generation sequencing data in the BAM format
- pkgver = 2.24.1
- pkgrel = 1
+ pkgver = 2.27.1
+ pkgrel = 2
url = https://github.com/broadinstitute/picard
arch = x86_64
license = MIT
- makedepends = gradle
depends = java-runtime=8
- source = picard-tools-2.24.1.tar.gz::https://github.com/broadinstitute/picard/archive/2.24.1.tar.gz
- sha256sums = 90a81f5df465d874e1b5a28a0fb4e2efafb872b5d5e0d726b8a81d3b6f9bb04b
+ source = https://github.com/broadinstitute/picard/releases/download/2.27.1/picard.jar
+ sha256sums = 87e94cebeeeaaa19dd2a5ab2d76b9ac51b007fbe5926294f9bb83b6811513152
pkgname = picard-tools
-
diff --git a/PKGBUILD b/PKGBUILD
index aff8cd8a8ea4..046d7bd2053b 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,45 +1,16 @@
# Maintainer: Grey Christoforo <first name at last name dot net>
pkgname=picard-tools
-pkgver=2.24.1
-pkgrel=1
+pkgver=2.27.1
+pkgrel=2
pkgdesc='set of tools for working with next generation sequencing data in the BAM format'
arch=(x86_64)
url="https://github.com/broadinstitute/picard"
license=(MIT)
depends=('java-runtime=8')
-makedepends=(gradle)
-source=("${pkgname}-${pkgver}.tar.gz::https://github.com/broadinstitute/picard/archive/${pkgver}.tar.gz")
-sha256sums=('90a81f5df465d874e1b5a28a0fb4e2efafb872b5d5e0d726b8a81d3b6f9bb04b')
-
-prepare(){
- cd picard-${pkgver}
-
- # disable git repo check
- sed -i '/file(".git").isDirectory() || (file(".git").exists() && file(".git").text.startsWith("gitdir"))/c\true' -i build.gradle
-
- # make the launch script
- cat <<EOF > picard
-#!/bin/sh
-exec /usr/bin/java -jar '/usr/share/java/picard-tools/picard.jar' "\$@"
-EOF
-}
-
-build() {
- cd picard-${pkgver}
- gradle shadowJar
-}
-
-check(){
- cd picard-${pkgver}
- gradle test
-}
+source=(https://github.com/broadinstitute/picard/releases/download/${pkgver}/picard.jar)
+sha256sums=('87e94cebeeeaaa19dd2a5ab2d76b9ac51b007fbe5926294f9bb83b6811513152')
package() {
- cd picard-${pkgver}
-
- install -Dt "${pkgdir}"/usr/share/java/picard-tools -m644 build/libs/picard.jar
- install -Dt "${pkgdir}"/usr/bin -m755 picard
-
- install -Dt "${pkgdir}/usr/share/licenses/${pkgname}" -m644 LICENSE.txt
+ install -Dm 755 picard.jar $pkgdir/usr/share/$pkgname/picard.jar
}