add r-gispa

2 files changed, 60 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..e50786396cf3
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,22 @@
+pkgbase = r-gispa
+	pkgdesc = GISPA: Method for Gene Integrated Set Profile Analysis
+	pkgver = 1.20.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/GISPA
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-biobase
+	depends = r-changepoint
+	depends = r-data.table
+	depends = r-genefilter
+	depends = r-gseabase
+	depends = r-hh
+	depends = r-latticeextra
+	depends = r-plyr
+	depends = r-scatterplot3d
+	optdepends = r-knitr
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/GISPA_1.20.0.tar.gz
+	sha256sums = 30e5bf2e785f35c8ddc03cfa70b9571cf8eb25771292453d63e696a0b833fce2
+
+pkgname = r-gispa
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..d18b58b12d64
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,38 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=GISPA
+_pkgver=1.20.0
+pkgname=r-${_pkgname,,}
+pkgver=1.20.0
+pkgrel=1
+pkgdesc='GISPA: Method for Gene Integrated Set Profile Analysis'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biobase
+  r-changepoint
+  r-data.table
+  r-genefilter
+  r-gseabase
+  r-hh
+  r-latticeextra
+  r-plyr
+  r-scatterplot3d
+)
+optdepends=(
+  r-knitr
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('30e5bf2e785f35c8ddc03cfa70b9571cf8eb25771292453d63e696a0b833fce2')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: