upgpkg: r-genomicranges 1.50.2-1

upstream release

2 files changed, 51 insertions, 51 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 03c9c5ce89f5..09918bbed756 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,15 +1,15 @@
 pkgbase = r-genomicranges
 	pkgdesc = Representation and manipulation of genomic intervals
-	pkgver = 1.48.0
-	pkgrel = 2
+	pkgver = 1.50.2
+	pkgrel = 1
 	url = https://bioconductor.org/packages/release/bioc/html/GenomicRanges.html
 	arch = i686
 	arch = x86_64
-	license = Artistic-2.0
+	license = Artistic2.0
 	depends = r>=4.0.0
 	depends = r-biocgenerics>=0.37.0
 	depends = r-s4vectors>=0.27.12
-	depends = r-iranges>=2.23.9
+	depends = r-iranges>=2.31.2
 	depends = r-genomeinfodb>=1.15.2
 	depends = r-xvector>=0.29.2
 	optdepends = r-annotate
@@ -46,7 +46,7 @@ pkgbase = r-genomicranges
 	optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
 	optdepends = r-txdb.mmusculus.ucsc.mm10.knowngene
 	optdepends = r-variantannotation
-	source = https://bioconductor.org/packages/release/bioc/src/contrib/GenomicRanges_1.48.0.tar.gz
-	sha256sums = d623d25b9eb20d4b48f42f6e30771101503b8e9e1592d76e310273ca54d81921
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/GenomicRanges_1.50.2.tar.gz
+	b2sums = 854b984dcaff9756f9d6878d0240bb9c2e879cab90476844c241c117ffdb00db27fd7f3e93a89d9fa733a270b6a84993fc20f83b09e1140a1be830f72ebf16c2
 
 pkgname = r-genomicranges
diff --git a/PKGBUILD b/PKGBUILD
index 55580cb207fd..3f74d4bc6604 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -3,60 +3,60 @@
 # Contributor: Grey Christoforo <first name at last name dot net>
 
 _bcname=GenomicRanges
-_bcver=1.48.0
+_bcver=1.50.2
 pkgname=r-${_bcname,,}
 pkgver=${_bcver//[:-]/.}
-pkgrel=2
+pkgrel=1
 pkgdesc="Representation and manipulation of genomic intervals"
 arch=(i686 x86_64)
 url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
-license=(Artistic-2.0)
+license=(Artistic2.0)
 depends=(
     "r>=4.0.0"
-	"r-biocgenerics>=0.37.0"
-	"r-s4vectors>=0.27.12"
-	"r-iranges>=2.23.9"
-	"r-genomeinfodb>=1.15.2"
-	"r-xvector>=0.29.2"
+    "r-biocgenerics>=0.37.0"
+    "r-s4vectors>=0.27.12"
+    "r-iranges>=2.31.2"
+    "r-genomeinfodb>=1.15.2"
+    "r-xvector>=0.29.2"
 )
 optdepends=(
-	r-annotate
-	r-annotationdbi
-	r-annotationhub
-    r-biobase
-	r-biocstyle
-	"r-biostrings>=2.25.3"
-	r-bsgenome
-	r-bsgenome.hsapiens.ucsc.hg19
-	r-bsgenome.mmusculus.ucsc.mm10
-	r-bsgenome.scerevisiae.ucsc.saccer2
-	r-deseq2
-	r-dexseq
-	r-digest
-	r-edger
-	r-genomicalignments
-	r-genomicfeatures
-	r-gviz
-	r-hgu95av2.db
-	r-hgu95av2probe
-	r-kegggraph
-	r-keggrest
-	r-knitr
-	r-pasillabamsubset
-	r-rmarkdown
-	r-rnaseqdata.hnrnpc.bam.chr14
-	"r-rsamtools>=1.13.53"
-	r-rtracklayer
-	r-runit
-	"r-summarizedexperiment>=0.1.5"
-	r-txdb.athaliana.biomart.plantsmart22
-	r-txdb.dmelanogaster.ucsc.dm3.ensgene
-	r-txdb.hsapiens.ucsc.hg19.knowngene
-	r-txdb.mmusculus.ucsc.mm10.knowngene
-	r-variantannotation
+    "r-annotate"
+    "r-annotationdbi"
+    "r-annotationhub"
+    "r-biobase"
+    "r-biocstyle"
+    "r-biostrings>=2.25.3"
+    "r-bsgenome"
+    "r-bsgenome.hsapiens.ucsc.hg19"
+    "r-bsgenome.mmusculus.ucsc.mm10"
+    "r-bsgenome.scerevisiae.ucsc.saccer2"
+    "r-deseq2"
+    "r-dexseq"
+    "r-digest"
+    "r-edger"
+    "r-genomicalignments"
+    "r-genomicfeatures"
+    "r-gviz"
+    "r-hgu95av2.db"
+    "r-hgu95av2probe"
+    "r-kegggraph"
+    "r-keggrest"
+    "r-knitr"
+    "r-pasillabamsubset"
+    "r-rmarkdown"
+    "r-rnaseqdata.hnrnpc.bam.chr14"
+    "r-rsamtools>=1.13.53"
+    "r-rtracklayer"
+    "r-runit"
+    "r-summarizedexperiment>=0.1.5"
+    "r-txdb.athaliana.biomart.plantsmart22"
+    "r-txdb.dmelanogaster.ucsc.dm3.ensgene"
+    "r-txdb.hsapiens.ucsc.hg19.knowngene"
+    "r-txdb.mmusculus.ucsc.mm10.knowngene"
+    "r-variantannotation"
 )
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
-sha256sums=("d623d25b9eb20d4b48f42f6e30771101503b8e9e1592d76e310273ca54d81921")
+b2sums=("854b984dcaff9756f9d6878d0240bb9c2e879cab90476844c241c117ffdb00db27fd7f3e93a89d9fa733a270b6a84993fc20f83b09e1140a1be830f72ebf16c2")
 
 build() {
   R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}"
@@ -66,7 +66,7 @@ package() {
   install -dm0755 "${pkgdir}/usr/lib/R/library"
   cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library"
 
-  if [[ -f "${_cranname}/LICENSE" ]]; then
-    install -Dm0644 "${_cranname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+  if [[ -f "${_bcname}/LICENSE" ]]; then
+    install -Dm0644 "${_bcname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
   fi
 }