add r-sc3

2 files changed, 82 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..8c5779d227ba
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,33 @@
+pkgbase = r-sc3
+	pkgdesc = Single-Cell Consensus Clustering
+	pkgver = 1.24.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/SC3
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-biocgenerics
+	depends = r-doparallel
+	depends = r-dorng
+	depends = r-e1071
+	depends = r-foreach
+	depends = r-ggplot2
+	depends = r-pheatmap
+	depends = r-rcpp
+	depends = r-rcpparmadillo
+	depends = r-robustbase
+	depends = r-rocr
+	depends = r-rrcov
+	depends = r-s4vectors
+	depends = r-shiny
+	depends = r-singlecellexperiment
+	depends = r-summarizedexperiment
+	depends = r-writexls
+	optdepends = r-knitr
+	optdepends = r-mclust
+	optdepends = r-rmarkdown
+	optdepends = r-scater
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/SC3_1.24.0.tar.gz
+	sha256sums = e253051097403d8c5cadad27193cfc35e402efe943ed3132c4ce95fc53073d9d
+
+pkgname = r-sc3
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..0f57c503c803
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,49 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=SC3
+_pkgver=1.24.0
+pkgname=r-${_pkgname,,}
+pkgver=1.24.0
+pkgrel=1
+pkgdesc='Single-Cell Consensus Clustering'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biocgenerics
+  r-doparallel
+  r-dorng
+  r-e1071
+  r-foreach
+  r-ggplot2
+  r-pheatmap
+  r-rcpp
+  r-rcpparmadillo
+  r-robustbase
+  r-rocr
+  r-rrcov
+  r-s4vectors
+  r-shiny
+  r-singlecellexperiment
+  r-summarizedexperiment
+  r-writexls
+)
+optdepends=(
+  r-knitr
+  r-mclust
+  r-rmarkdown
+  r-scater
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('e253051097403d8c5cadad27193cfc35e402efe943ed3132c4ce95fc53073d9d')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: