version update to 5.1

2 files changed, 24 insertions, 22 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 04a778d91cc2..a9ad896ce817 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,17 +1,16 @@
 pkgbase = snpeff
-	pkgdesc = Genetic variant annotation and effect prediction toolbox
-	pkgver = 4_3t
-	pkgrel = 2
-	url = http://snpeff.sourceforge.net/
+	pkgdesc = Genetic variant annotation and effect prediction toolbox. https://doi.org/10.4161/fly.19695
+	pkgver = 5.1
+	pkgrel = 1
+	url = https://pcingola.github.io/SnpEff/
 	arch = any
-	license = (L)GPL3
-	depends = java-runtime>=8
+	license = MIT
+	depends = java-runtime>=12
 	source = snpEff.sh
 	source = SnpSift.sh
-	source = http://sourceforge.net/projects/snpeff/files/snpEff_v4_3t_core.zip
+	source = https://snpeff.blob.core.windows.net/versions/snpEff_latest_core.zip
 	sha256sums = e0ba5679a90efdb39cd9398b1db708444fd8e5321182cedf72696b3ae1e2e2b9
 	sha256sums = 4bd0163c6b8864ed6ea3f20d215b0bf371e10eaa4156ffcf8429d6f71ded93e3
-	sha256sums = d55a7389a78312947c1e7dadf5e6897b42d3c6e942e7c1b8ec68bb35d2ae2244
+	sha256sums = 919e0595c08e86d1dd82279723c83cb872070244ee4ce0cb3167bde2b272893b
 
 pkgname = snpeff
-
diff --git a/PKGBUILD b/PKGBUILD
index fd15d348f699..c5c12a062106 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,30 +1,33 @@
 # Maintainer: Clint Valentine <valentine.clint@gmail.com>
 
 pkgname=snpeff
-pkgver=4_3t
-pkgrel=2
-pkgdesc="Genetic variant annotation and effect prediction toolbox"
+pkgver=5.1
+pkgrel=1
+pkgdesc="Genetic variant annotation and effect prediction toolbox. https://doi.org/10.4161/fly.19695"
 arch=('any')
-url="http://snpeff.sourceforge.net/"
-license=('(L)GPL3')
-depends=('java-runtime>=8')
+url="https://pcingola.github.io/SnpEff/"
+license=('MIT')
+depends=('java-runtime>=12')
 source=(
   snpEff.sh
   SnpSift.sh
-  http://sourceforge.net/projects/"${pkgname}"/files/snpEff_v"${pkgver}"_core.zip
-)
-sha256sums=(
-  'e0ba5679a90efdb39cd9398b1db708444fd8e5321182cedf72696b3ae1e2e2b9'
-  '4bd0163c6b8864ed6ea3f20d215b0bf371e10eaa4156ffcf8429d6f71ded93e3'
-  'd55a7389a78312947c1e7dadf5e6897b42d3c6e942e7c1b8ec68bb35d2ae2244'
+  https://snpeff.blob.core.windows.net/versions/snpEff_latest_core.zip
+  #http://sourceforge.net/projects/"${pkgname}"/files/snpEff_v"${pkgver}"_core.zip
 )
+sha256sums=('e0ba5679a90efdb39cd9398b1db708444fd8e5321182cedf72696b3ae1e2e2b9'
+            '4bd0163c6b8864ed6ea3f20d215b0bf371e10eaa4156ffcf8429d6f71ded93e3'
+            '919e0595c08e86d1dd82279723c83cb872070244ee4ce0cb3167bde2b272893b')
 
 package() {
   cd "${srcdir}/"
-
+  install -Dm644 snpEff/snpEff.jar  "${pkgdir}"/usr/share/java/snpEff/snpEff.jar
+  for d in snpEff/ ; do
+    cp -R "$d" "${pkgdir}"/usr/share/java/
+  done
   install -Dm644 snpEff/snpEff.jar  "${pkgdir}"/usr/share/java/snpEff/snpEff.jar
   install -Dm644 snpEff/SnpSift.jar "${pkgdir}"/usr/share/java/snpEff/SnpSift.jar
   install -Dm644 snpEff/snpEff.config "${pkgdir}"/usr/share/java/snpEff/snpEff.config
+  install -Dm644 snpEff/LICENSE.md "${pkgdir}"/usr/share/licenses/snpEff/LICENSE.md
   install -Dm755 snpEff.sh "${pkgdir}"/usr/bin/snpEff
   install -Dm755 SnpSift.sh "${pkgdir}"/usr/bin/SnpSift
 }