update to 0.6.4

4 files changed, 86 insertions, 24 deletions

diff --git a/.SRCINFO b/.SRCINFO
index fe6292c3a7f8..c4120cbf5be1 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,8 +1,9 @@
 pkgbase = python-ripser
 	pkgdesc = Homology Library for Python
-	pkgver = 0.6.1
+	pkgver = 0.6.4
 	pkgrel = 1
 	url = https://github.com/scikit-tda/ripser.py
+	changelog = CHANGELOG.md
 	arch = x86_64
 	license = MIT
 	makedepends = cython
@@ -14,11 +15,9 @@ pkgbase = python-ripser
 	depends = python-scipy
 	depends = python-scikit-learn
 	depends = python-persim
-	source = python-ripser-0.6.1.tar.gz::https://files.pythonhosted.org/packages/source/r/ripser/ripser-0.6.1.tar.gz
+	source = python-ripser-0.6.4.tar.gz::https://files.pythonhosted.org/packages/source/r/ripser/ripser-0.6.4.tar.gz
 	source = setup.py.patch
-	source = header.patch
-	sha256sums = 335112a0f94532ccbe686db7826ee8d0714b32f65891abf92c0a02f3cb0fc5fd
+	sha256sums = 7a9b3e9420869c50df85e9a446c912b8af81621e62ca1af8f9492c6335b7e594
 	sha256sums = 5d6538cf07d897cfead808048682266bcf2a9199f2ddda9becd4919221612195
-	sha256sums = cd5b619ce29859d26890e9256f3e883c463c1196c3e9a172b7de264584990a4a
 
 pkgname = python-ripser
diff --git a/CHANGELOG.md b/CHANGELOG.md
new file mode 100644
index 000000000000..1cbbb1cc6678
--- /dev/null
+++ b/CHANGELOG.md
@@ -0,0 +1,77 @@
+# 0.6.4
+    - Add some includes to ripser.cpp for newer Ubuntu/C++ environments
+
+# 0.6.3
+    - Update numpy header
+
+# 0.6.2
+    - Prevent simplex assembly in last dimension for improved memory usage (courtesy of Umberto Lupo)
+
+# 0.6.1
+    - Lazy import plotting dependencies
+
+# 0.6.0
+    - Update C++ backend to commit 286d369 of [ripser](https://github.com/Ripser/ripser) but keeping same functionalities
+    - Add support to robinhood hashmap into the C++ Backend
+    - Update CI in order to compile C++ with robinhood enable
+    - Enable Enclosing radius when threshold is set to infinity
+
+# 0.5.5
+    - Updating CI/CD pipeline.
+
+# 0.5.4
+    - Fixing issue with inconsistent answers from different scipy.sparse formats, courtesy of Umberto Lupo
+
+# 0.5.3
+    - Adding link to ripser++ GPU version by Simon Zhang
+
+# 0.5.2:
+    - Cocycle indices now correspond to point cloud indices, even
+      when a greedy permutation is in use
+
+# 0.4.1:
+    - Fixed packing so C++ is MSVC compatible.
+
+# 0.4.0:
+    - Added license to distributed packages.
+
+# 0.3.2:
+    - Added support for greedy permutations.
+    - Outsourced plotting to persim.
+    - Outsourced data construction in examples to tadasets.
+    - Revamped documentation.
+
+# 0.3.0:
+    - Completed JOSS review, thanks @lmcinnes and @arokem!!
+    - Documentation details updated.
+
+# 0.2.7:
+    - Updating home url
+
+# 0.2.6:
+    - Update license to MIT.
+
+# 0.2.5:
+    - Docs and notebooks revamp.
+    - Support for Windows.
+
+# 0.2.4:
+    - Interface redesign
+
+# 0.2.3:
+    - Support for lower star filtrations
+    - Notebook on lower star filtrations
+
+# 0.2.1:
+    - Sparse distance matrix support
+    - Two additional notebooks about sparsity
+    - Language agnostic bindings support
+    - Bug fixes (filtrations with low number of points)
+
+# 0.2.0:
+    - Bug fixes (int rounding error for small magnitude threshold)
+
+# 0.1.7:
+    - Generation of cocycles.
+    - Handle inf in C code and in plotting.
+    - Many new options for plotting diagrams.
diff --git a/PKGBUILD b/PKGBUILD
index 837c18097a36..027ac298758b 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -3,7 +3,7 @@
 
 pkgname=python-ripser
 _pkg="${pkgname#python-}"
-pkgver=0.6.1
+pkgver=0.6.4
 pkgrel=1
 pkgdesc="Homology Library for Python"
 arch=('x86_64')
@@ -11,15 +11,13 @@ url="https://github.com/scikit-tda/ripser.py"
 license=('MIT')
 depends=('python-numpy' 'python-scipy' 'python-scikit-learn' 'python-persim')
 makedepends=('cython' 'python-build' 'python-installer' 'python-setuptools' 'python-wheel')
+changelog=CHANGELOG.md
 source=("$pkgname-$pkgver.tar.gz::https://files.pythonhosted.org/packages/source/r/$_pkg/$_pkg-$pkgver.tar.gz"
-        'setup.py.patch'
-        'header.patch')
-sha256sums=('335112a0f94532ccbe686db7826ee8d0714b32f65891abf92c0a02f3cb0fc5fd'
-            '5d6538cf07d897cfead808048682266bcf2a9199f2ddda9becd4919221612195'
-            'cd5b619ce29859d26890e9256f3e883c463c1196c3e9a172b7de264584990a4a')
+        'setup.py.patch')
+sha256sums=('7a9b3e9420869c50df85e9a446c912b8af81621e62ca1af8f9492c6335b7e594'
+            '5d6538cf07d897cfead808048682266bcf2a9199f2ddda9becd4919221612195')
 
 prepare() {
-	patch -p1 -d "$_pkg-$pkgver" < header.patch
 	patch -p1 -d "$_pkg-$pkgver" < setup.py.patch
 }
 
diff --git a/header.patch b/header.patch
deleted file mode 100644
index 98c0445c9fc7..000000000000
--- a/header.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff --git a/ripser/ripser.cpp b/ripser/ripser.cpp
-index f2b7531..2c225c5 100644
---- a/ripser/ripser.cpp
-+++ b/ripser/ripser.cpp
-@@ -46,6 +46,7 @@ derivative works thereof, in binary and source code form.
- #include <iomanip>
- #include <iostream>
- #include <iterator>
-+#include <limits>
- #include <numeric>
- #include <queue>
- #include <sstream>