Initial commit, STAR v.2.5

2 files changed, 50 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..533b85f8e027
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,15 @@
+pkgbase = star-seq-alignment
+	pkgdesc = An RNA-seq alignment suite, by Alexander Doin
+	pkgver = v2.5
+	pkgrel = 1
+	url = https://github.com/alexdobin/STAR
+	arch = i686
+	arch = x86_64
+	license = GPLv3
+	makedepends = wget
+	makedepends = gcc
+	source = https://github.com/alexdobin/STAR/archive/2.5.2b.tar.gz
+	md5sums = 31a0c48f4d163f11238e1f7add3ab5c4
+
+pkgname = star-seq-alignment
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100755
index 000000000000..07603e38c826
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,35 @@
+# Maintainer: Nigel Michki <nigeil@yahoo.com>
+pkgname=star-seq-alignment
+pkgver=v2.5
+pkgrel=1
+pkgdesc="An RNA-seq alignment suite, by Alexander Doin"
+arch=('i686' 
+      'x86_64')
+url="https://github.com/alexdobin/STAR"
+license=('GPLv3')
+groups=()
+conflicts=()
+depends=()
+makedepends=('wget'
+             'gcc')
+optdepends=()
+source=('https://github.com/alexdobin/STAR/archive/2.5.2b.tar.gz')
+md5sums=('31a0c48f4d163f11238e1f7add3ab5c4')
+
+prepare() {
+  msg2 "Downloading files"
+  wget $source
+  msg2 "Decompressing files"
+  tar -xzvf $srcdir/2.5.2b.tar.gz
+}
+
+build() {
+  cd $srcdir/STAR-2.5.2b/source
+  make STAR
+}
+
+package() {
+  mkdir $pkgdir/usr
+  mkdir $pkgdir/usr/bin
+  cp $srcdir/STAR-2.5.2b/source/STAR $pkgdir/usr/bin/star-seq-alignment
+}