add r-cydar

2 files changed, 83 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..54eb25bb6c9c
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,33 @@
+pkgbase = r-cydar
+	pkgdesc = Using Mass Cytometry for Differential Abundance Analyses
+	pkgver = 1.20.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/cydar
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-biobase
+	depends = r-biocgenerics
+	depends = r-biocneighbors
+	depends = r-biocparallel
+	depends = r-flowcore
+	depends = r-rcpp
+	depends = r-s4vectors
+	depends = r-shiny
+	depends = r-singlecellexperiment
+	depends = r-summarizedexperiment
+	depends = r-viridis
+	depends = gcc
+	optdepends = r-biocstyle
+	optdepends = r-edger
+	optdepends = r-flowstats
+	optdepends = r-glmnet
+	optdepends = r-knitr
+	optdepends = r-limma
+	optdepends = r-ncdfflow
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/cydar_1.20.0.tar.gz
+	sha256sums = 34eb84888c4bdd6c7720bb2423a0ae88b3eaef7652da26f2a09a1246ab1e9f1e
+
+pkgname = r-cydar
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..1092391b1b4a
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,50 @@
+# system requirements: C++11
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=cydar
+_pkgver=1.20.0
+pkgname=r-${_pkgname,,}
+pkgver=1.20.0
+pkgrel=1
+pkgdesc='Using Mass Cytometry for Differential Abundance Analyses'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biobase
+  r-biocgenerics
+  r-biocneighbors
+  r-biocparallel
+  r-flowcore
+  r-rcpp
+  r-s4vectors
+  r-shiny
+  r-singlecellexperiment
+  r-summarizedexperiment
+  r-viridis
+  gcc
+)
+optdepends=(
+  r-biocstyle
+  r-edger
+  r-flowstats
+  r-glmnet
+  r-knitr
+  r-limma
+  r-ncdfflow
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('34eb84888c4bdd6c7720bb2423a0ae88b3eaef7652da26f2a09a1246ab1e9f1e')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: