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author | Sukanka | 2022-06-06 21:50:57 +0800 |
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committer | Sukanka | 2022-06-06 21:50:57 +0800 |
commit | 3979a5a0d8e65ff86b3605eb3046c6ddde0ccaf2 (patch) | |
tree | 266e1d67f5e4d99090be665f0e8fca8c2fa70a1b | |
download | aur-3979a5a0d8e65ff86b3605eb3046c6ddde0ccaf2.tar.gz |
add r-ruvseq
-rw-r--r-- | .SRCINFO | 20 | ||||
-rw-r--r-- | PKGBUILD | 36 |
2 files changed, 56 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..90dd57a7d3ef --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,20 @@ +pkgbase = r-ruvseq + pkgdesc = Remove Unwanted Variation from RNA-Seq Data + pkgver = 1.30.0 + pkgrel = 1 + url = https://bioconductor.org/packages/RUVSeq + arch = any + license = Artistic2.0 + depends = r + depends = r-biobase + depends = r-edaseq + depends = r-edger + optdepends = r-biocstyle + optdepends = r-deseq2 + optdepends = r-knitr + optdepends = r-rcolorbrewer + optdepends = r-zebrafishrnaseq + source = https://bioconductor.org/packages/release/bioc/src/contrib/RUVSeq_1.30.0.tar.gz + sha256sums = fdbc4b8d4fa110b982c190df69f2e1f0ea9b16a5e936b94c901b9203d6013000 + +pkgname = r-ruvseq diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..30181436d3fb --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,36 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=RUVSeq +_pkgver=1.30.0 +pkgname=r-${_pkgname,,} +pkgver=1.30.0 +pkgrel=1 +pkgdesc='Remove Unwanted Variation from RNA-Seq Data' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('Artistic2.0') +depends=( + r + r-biobase + r-edaseq + r-edger +) +optdepends=( + r-biocstyle + r-deseq2 + r-knitr + r-rcolorbrewer + r-zebrafishrnaseq +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('fdbc4b8d4fa110b982c190df69f2e1f0ea9b16a5e936b94c901b9203d6013000') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |