add r-annotationhub

2 files changed, 108 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..d531a7b9239b
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,46 @@
+pkgbase = r-annotationhub
+	pkgdesc = Client to access AnnotationHub resources
+	pkgver = 3.4.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/AnnotationHub
+	arch = x86_64
+	license = Artistic2.0
+	depends = r
+	depends = r-annotationdbi
+	depends = r-biocfilecache
+	depends = r-biocgenerics
+	depends = r-biocmanager
+	depends = r-biocversion
+	depends = r-curl
+	depends = r-dplyr
+	depends = r-httr
+	depends = r-interactivedisplaybase
+	depends = r-rappdirs
+	depends = r-rsqlite
+	depends = r-s4vectors
+	depends = r-yaml
+	optdepends = r-annotationforge
+	optdepends = r-annotationhubdata
+	optdepends = r-biocstyle
+	optdepends = r-biostrings
+	optdepends = r-experimenthub
+	optdepends = r-gdsfmt
+	optdepends = r-genomeinfodb
+	optdepends = r-genomicfeatures
+	optdepends = r-genomicranges
+	optdepends = r-hubpub
+	optdepends = r-iranges
+	optdepends = r-knitr
+	optdepends = r-msnbase
+	optdepends = r-mzr
+	optdepends = r-rbiopaxparser
+	optdepends = r-rmarkdown
+	optdepends = r-rsamtools
+	optdepends = r-rtracklayer
+	optdepends = r-runit
+	optdepends = r-summarizedexperiment
+	optdepends = r-variantannotation
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/AnnotationHub_3.4.0.tar.gz
+	sha256sums = bacb8e2c4f14168087aa5c463902f3f910acf27d224c4ad2ee69eb3c485fb50d
+
+pkgname = r-annotationhub
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..f1e5add7692c
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,62 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=AnnotationHub
+_pkgver=3.4.0
+pkgname=r-${_pkgname,,}
+pkgver=3.4.0
+pkgrel=1
+pkgdesc='Client to access AnnotationHub resources'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-annotationdbi
+  r-biocfilecache
+  r-biocgenerics
+  r-biocmanager
+  r-biocversion
+  r-curl
+  r-dplyr
+  r-httr
+  r-interactivedisplaybase
+  r-rappdirs
+  r-rsqlite
+  r-s4vectors
+  r-yaml
+)
+optdepends=(
+  r-annotationforge
+  r-annotationhubdata
+  r-biocstyle
+  r-biostrings
+  r-experimenthub
+  r-gdsfmt
+  r-genomeinfodb
+  r-genomicfeatures
+  r-genomicranges
+  r-hubpub
+  r-iranges
+  r-knitr
+  r-msnbase
+  r-mzr
+  r-rbiopaxparser
+  r-rmarkdown
+  r-rsamtools
+  r-rtracklayer
+  r-runit
+  r-summarizedexperiment
+  r-variantannotation
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('bacb8e2c4f14168087aa5c463902f3f910acf27d224c4ad2ee69eb3c485fb50d')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: