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author | Sukanka | 2022-06-06 19:35:18 +0800 |
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committer | Sukanka | 2022-06-06 19:35:18 +0800 |
commit | 3f146ae2ac91b7b8a9899fe8bc2a3353bfa00fd4 (patch) | |
tree | a58b1827d9b5611657d34de25d52efd99956ed67 | |
download | aur-3f146ae2ac91b7b8a9899fe8bc2a3353bfa00fd4.tar.gz |
add r-quasr
-rw-r--r-- | .SRCINFO | 37 | ||||
-rw-r--r-- | PKGBUILD | 54 |
2 files changed, 91 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..a168423a75c1 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,37 @@ +pkgbase = r-quasr + pkgdesc = Quantify and Annotate Short Reads in R + pkgver = 1.36.0 + pkgrel = 1 + url = https://bioconductor.org/packages/QuasR + arch = x86_64 + license = GPL + depends = r + depends = r-annotationdbi + depends = r-biobase + depends = r-biocgenerics + depends = r-biocparallel + depends = r-biostrings + depends = r-bsgenome + depends = r-genomeinfodb + depends = r-genomicfeatures + depends = r-genomicfiles + depends = r-genomicranges + depends = r-iranges + depends = r-rbowtie + depends = r-rhtslib + depends = r-rsamtools + depends = r-rtracklayer + depends = r-s4vectors + depends = r-shortread + optdepends = r-biocstyle + optdepends = r-covr + optdepends = r-genomicalignments + optdepends = r-gviz + optdepends = r-knitr + optdepends = r-rhisat2 + optdepends = r-rmarkdown + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/QuasR_1.36.0.tar.gz + sha256sums = 8ede9fb6c4ceb0292ad0c68ef4f7ec8b01a2b361a1c0667226b6cda95a060cd4 + +pkgname = r-quasr diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..0246257895c2 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,54 @@ +# system requirements: GNU make +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=QuasR +_pkgver=1.36.0 +pkgname=r-${_pkgname,,} +pkgver=1.36.0 +pkgrel=1 +pkgdesc='Quantify and Annotate Short Reads in R' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-annotationdbi + r-biobase + r-biocgenerics + r-biocparallel + r-biostrings + r-bsgenome + r-genomeinfodb + r-genomicfeatures + r-genomicfiles + r-genomicranges + r-iranges + r-rbowtie + r-rhtslib + r-rsamtools + r-rtracklayer + r-s4vectors + r-shortread +) +optdepends=( + r-biocstyle + r-covr + r-genomicalignments + r-gviz + r-knitr + r-rhisat2 + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('8ede9fb6c4ceb0292ad0c68ef4f7ec8b01a2b361a1c0667226b6cda95a060cd4') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |