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author | Sukanka | 2022-06-06 06:59:28 +0800 |
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committer | Sukanka | 2022-06-06 06:59:28 +0800 |
commit | 43a35321f523462b01b8c1792faf54558472368d (patch) | |
tree | 5df2ebaf45058f7b96eae75b62d4a3700db732b4 | |
download | aur-43a35321f523462b01b8c1792faf54558472368d.tar.gz |
add r-conclus
-rw-r--r-- | .SRCINFO | 43 | ||||
-rw-r--r-- | PKGBUILD | 59 |
2 files changed, 102 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..19a97d0eda80 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,43 @@ +pkgbase = r-conclus + pkgdesc = ScRNA-seq Workflow CONCLUS - From CONsensus CLUSters To A Meaningful CONCLUSion + pkgver = 1.3.3 + pkgrel = 1 + url = https://bioconductor.org/packages/conclus + arch = any + license = GPL + depends = r + depends = r-annotationdbi + depends = r-biobase + depends = r-biocfilecache + depends = r-biomart + depends = r-clusterprofiler + depends = r-dbscan + depends = r-doparallel + depends = r-dplyr + depends = r-factoextra + depends = r-foreach + depends = r-fpc + depends = r-geoquery + depends = r-ggplot2 + depends = r-gridextra + depends = r-pheatmap + depends = r-rtsne + depends = r-scales + depends = r-scater + depends = r-scran + depends = r-singlecellexperiment + depends = r-stringr + depends = r-summarizedexperiment + depends = r-org.mm.eg.db + depends = r-org.hs.eg.db + optdepends = r-biocstyle + optdepends = r-dynamictreecut + optdepends = r-knitr + optdepends = r-matrixstats + optdepends = r-rmarkdown + optdepends = r-s4vectors + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/conclus_1.3.3.tar.gz + sha256sums = 469178ed2a313a6f39fd8306b4470601b691edbcd0acfd896d4019c7c304f9d1 + +pkgname = r-conclus diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..d06ff5aef2ab --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,59 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=conclus +_pkgver=1.3.3 +pkgname=r-${_pkgname,,} +pkgver=1.3.3 +pkgrel=1 +pkgdesc='ScRNA-seq Workflow CONCLUS - From CONsensus CLUSters To A Meaningful CONCLUSion' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-annotationdbi + r-biobase + r-biocfilecache + r-biomart + r-clusterprofiler + r-dbscan + r-doparallel + r-dplyr + r-factoextra + r-foreach + r-fpc + r-geoquery + r-ggplot2 + r-gridextra + r-pheatmap + r-rtsne + r-scales + r-scater + r-scran + r-singlecellexperiment + r-stringr + r-summarizedexperiment + r-org.mm.eg.db + r-org.hs.eg.db +) +optdepends=( + r-biocstyle + r-dynamictreecut + r-knitr + r-matrixstats + r-rmarkdown + r-s4vectors + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('469178ed2a313a6f39fd8306b4470601b691edbcd0acfd896d4019c7c304f9d1') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |