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| author | Philipp A | 2023-04-23 15:30:09 +0200 |
|---|---|---|
| committer | Philipp A | 2023-04-23 15:30:09 +0200 |
| commit | 48bcdc4bc3f8257980f6d52608ca0f74ed245449 (patch) | |
| tree | efa775fa946e337851851d9b3192ab5ecf370241 | |
| parent | 263f00ef4df89e65e88a8722a6a61ac1c45b2be3 (diff) | |
| download | aur-48bcdc4bc3f8257980f6d52608ca0f74ed245449.tar.gz | |
v1.93
| -rw-r--r-- | .SRCINFO | 13 | ||||
| -rw-r--r-- | .gitignore | 1 | ||||
| -rw-r--r-- | PKGBUILD | 11 |
3 files changed, 18 insertions, 7 deletions
@@ -1,7 +1,7 @@ pkgbase = scanpy pkgdesc = Single-Cell Analysis in Python - pkgver = 1.9.1 - pkgrel = 2 + pkgver = 1.9.3 + pkgrel = 1 url = https://github.com/theislab/scanpy arch = any license = BSD @@ -28,6 +28,7 @@ pkgbase = scanpy depends = python-umap-learn>=0.3.10 depends = python-packaging depends = python-sinfo + optdepends = python-igraph: PAGA support (also transitively needed for Louvain/Leiden) optdepends = python-louvain-igraph: Louvain clustering optdepends = python-leidenalg: leiden community detection optdepends = python-bbknn: Batch balanced KNN (batch correction) @@ -37,9 +38,13 @@ pkgbase = scanpy optdepends = python-harmonypy: Harmony dataset integration algorithm optdepends = python-scanorama: Scanorama dataset integration algorithm optdepends = python-scrublet: Cell doublet detection + optdepends = rapids-cudf: NVIDIA RAPIDS acceleration + optdepends = rapids-cuml: NVIDIA RAPIDS acceleration + optdepends = rapids-cugraph: NVIDIA RAPIDS acceleration + optdepends = python-dask: Dask parallelization provides = scanpy provides = python-scanpy - source = https://files.pythonhosted.org/packages/source/s/scanpy/scanpy-1.9.1.tar.gz - sha256sums = 00c9a83b649da7e0171c91e9a08cff632102faa760614fd05cd4d1dbba4eb541 + source = https://files.pythonhosted.org/packages/source/s/scanpy/scanpy-1.9.3.tar.gz + sha256sums = dfe65f9acd9f4c1740079a099f89fa6a44b6f0ef75ecaf85247ad4af859144d7 pkgname = scanpy diff --git a/.gitignore b/.gitignore index 7e480d700bee..6b535dcf8f80 100644 --- a/.gitignore +++ b/.gitignore @@ -2,3 +2,4 @@ /src/ /*.pkg.* /*.tar.gz +/*.log @@ -1,8 +1,8 @@ # Maintainer: Philipp A. <flying-sheep@web.de> pkgname=scanpy -pkgver=1.9.1 -pkgrel=2 +pkgver=1.9.3 +pkgrel=1 pkgdesc='Single-Cell Analysis in Python' arch=(any) provides=(scanpy python-scanpy) @@ -29,6 +29,7 @@ depends=( python-sinfo ) optdepends=( + 'python-igraph: PAGA support (also transitively needed for Louvain/Leiden)' 'python-louvain-igraph: Louvain clustering' 'python-leidenalg: leiden community detection' 'python-bbknn: Batch balanced KNN (batch correction)' @@ -38,10 +39,14 @@ optdepends=( 'python-harmonypy: Harmony dataset integration algorithm' 'python-scanorama: Scanorama dataset integration algorithm' 'python-scrublet: Cell doublet detection' + 'rapids-cudf: NVIDIA RAPIDS acceleration' + 'rapids-cuml: NVIDIA RAPIDS acceleration' + 'rapids-cugraph: NVIDIA RAPIDS acceleration' + 'python-dask: Dask parallelization' ) makedepends=(python-flit-core python-setuptools-scm python-build python-installer python-wheel) source=("https://files.pythonhosted.org/packages/source/${pkgname::1}/$pkgname/$pkgname-$pkgver.tar.gz") -sha256sums=('00c9a83b649da7e0171c91e9a08cff632102faa760614fd05cd4d1dbba4eb541') +sha256sums=('dfe65f9acd9f4c1740079a099f89fa6a44b6f0ef75ecaf85247ad4af859144d7') build() { cd "$pkgname-$pkgver" |