add r-phosr

2 files changed, 114 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..b1a59792fc15
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,49 @@
+pkgbase = r-phosr
+	pkgdesc = A set of methods and tools for comprehensive analysis of phosphoproteomics data
+	pkgver = 1.6.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/PhosR
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-biocgenerics
+	depends = r-circlize
+	depends = r-dendextend
+	depends = r-dplyr
+	depends = r-e1071
+	depends = r-ggally
+	depends = r-ggdendro
+	depends = r-ggplot2
+	depends = r-ggpubr
+	depends = r-ggtext
+	depends = r-igraph
+	depends = r-limma
+	depends = r-network
+	depends = r-pcamethods
+	depends = r-pheatmap
+	depends = r-preprocesscore
+	depends = r-rcolorbrewer
+	depends = r-reshape2
+	depends = r-rlang
+	depends = r-ruv
+	depends = r-s4vectors
+	depends = r-summarizedexperiment
+	depends = r-tidyr
+	optdepends = r-annotate
+	optdepends = r-biocstyle
+	optdepends = r-calibrate
+	optdepends = r-cluer
+	optdepends = r-directpa
+	optdepends = r-knitr
+	optdepends = r-org.mm.eg.db
+	optdepends = r-org.rn.eg.db
+	optdepends = r-reactome.db
+	optdepends = r-rgl
+	optdepends = r-rmarkdown
+	optdepends = r-sna
+	optdepends = r-stringr
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/PhosR_1.6.0.tar.gz
+	sha256sums = e24af46b24fd6144d042e94b1e09696f91e3d538bbb32a43540b968a0ac9f865
+
+pkgname = r-phosr
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..335fb86e245b
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,65 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=PhosR
+_pkgver=1.6.0
+pkgname=r-${_pkgname,,}
+pkgver=1.6.0
+pkgrel=1
+pkgdesc='A set of methods and tools for comprehensive analysis of phosphoproteomics data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biocgenerics
+  r-circlize
+  r-dendextend
+  r-dplyr
+  r-e1071
+  r-ggally
+  r-ggdendro
+  r-ggplot2
+  r-ggpubr
+  r-ggtext
+  r-igraph
+  r-limma
+  r-network
+  r-pcamethods
+  r-pheatmap
+  r-preprocesscore
+  r-rcolorbrewer
+  r-reshape2
+  r-rlang
+  r-ruv
+  r-s4vectors
+  r-summarizedexperiment
+  r-tidyr
+)
+optdepends=(
+  r-annotate
+  r-biocstyle
+  r-calibrate
+  r-cluer
+  r-directpa
+  r-knitr
+  r-org.mm.eg.db
+  r-org.rn.eg.db
+  r-reactome.db
+  r-rgl
+  r-rmarkdown
+  r-sna
+  r-stringr
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('e24af46b24fd6144d042e94b1e09696f91e3d538bbb32a43540b968a0ac9f865')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: