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author | Sukanka | 2022-06-06 10:49:44 +0800 |
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committer | Sukanka | 2022-06-06 10:49:44 +0800 |
commit | 4e002075053915e7c1c8c217ca102b37f7af394d (patch) | |
tree | a0aafa58d220c618ab0de904b2e4ac5c189c2c3c | |
download | aur-4e002075053915e7c1c8c217ca102b37f7af394d.tar.gz |
add r-genphen
-rw-r--r-- | .SRCINFO | 28 | ||||
-rw-r--r-- | PKGBUILD | 44 |
2 files changed, 72 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..d13b21b8ddcf --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,28 @@ +pkgbase = r-genphen + pkgdesc = genphen: tool for quantification of genotype-phenotype associations in genome wide association studies (GWAS) + pkgver = 1.24.0 + pkgrel = 1 + url = https://bioconductor.org/packages/genphen + arch = any + license = GPL + depends = r + depends = r-biostrings + depends = r-doparallel + depends = r-e1071 + depends = r-foreach + depends = r-ranger + depends = r-rcpp + depends = r-rpref + depends = r-rstan + optdepends = r-ape + optdepends = r-ggplot2 + optdepends = r-ggrepel + optdepends = r-gridextra + optdepends = r-knitr + optdepends = r-reshape + optdepends = r-testthat + optdepends = r-xtable + source = https://bioconductor.org/packages/release/bioc/src/contrib/genphen_1.24.0.tar.gz + sha256sums = 6805ee931998ad03305a3b56a3356502cb0519cf1bba2f3fe931eece9ec2c0d4 + +pkgname = r-genphen diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..d9513243863c --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,44 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=genphen +_pkgver=1.24.0 +pkgname=r-${_pkgname,,} +pkgver=1.24.0 +pkgrel=1 +pkgdesc='genphen: tool for quantification of genotype-phenotype associations in genome wide association studies (GWAS)' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biostrings + r-doparallel + r-e1071 + r-foreach + r-ranger + r-rcpp + r-rpref + r-rstan +) +optdepends=( + r-ape + r-ggplot2 + r-ggrepel + r-gridextra + r-knitr + r-reshape + r-testthat + r-xtable +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('6805ee931998ad03305a3b56a3356502cb0519cf1bba2f3fe931eece9ec2c0d4') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |