upgpkg: python-pymc 5.10.3-2

2 files changed, 74 insertions, 16 deletions

diff --git a/.SRCINFO b/.SRCINFO
index e9e6bd8d343a..594eaec82997 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,7 +1,7 @@
 pkgbase = python-pymc
 	pkgdesc = Markov chain Monte Carlo for Python
 	pkgver = 5.10.3
-	pkgrel = 1
+	pkgrel = 2
 	url = https://github.com/pymc-devs/pymc
 	arch = any
 	license = MIT
@@ -26,6 +26,6 @@ pkgbase = python-pymc
 	depends = python-typing_extensions
 	depends = python-xarray
 	source = python-pymc-5.10.3.tar.gz::https://github.com/pymc-devs/pymc/archive/refs/tags/v5.10.3.tar.gz
-	sha256sums = 32e0d317f017b2e763b39e6e5946054970b2b5b2018a01cfae614537fe0a2560
+	sha256sums = 786932f6cbd137f100200c9b5230ac6d943578eadf252d74e191941ee9791430
 
 pkgname = python-pymc
diff --git a/PKGBUILD b/PKGBUILD
index 41797b89beaf..6daeebd12c44 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -4,7 +4,7 @@
 pkgname=python-pymc
 _name=${pkgname#python-}
 pkgver=5.10.3
-pkgrel=1
+pkgrel=2
 pkgdesc="Markov chain Monte Carlo for Python"
 arch=(any)
 url="https://github.com/pymc-devs/pymc"
@@ -35,7 +35,7 @@ makedepends=(
 )
 
 source=("$pkgname-$pkgver.tar.gz::$url/archive/refs/tags/v$pkgver.tar.gz")
-sha256sums=('32e0d317f017b2e763b39e6e5946054970b2b5b2018a01cfae614537fe0a2560')
+sha256sums=('786932f6cbd137f100200c9b5230ac6d943578eadf252d74e191941ee9791430')
 
 _archive="$_name-$pkgver"
 
@@ -48,23 +48,81 @@ build() {
 check() {
   cd "$_archive"
 
-  python -m pytest \
-    tests/test_initial_point.py \
-    tests/test_math.py \
-    tests/test_model_graph.py \
-    tests/test_printing.py \
-    tests/test_pytensorf.py \
-    tests/test_testing.py \
-    tests/test_util.py \
-    -k "\
-      not test_softmax_logsoftmax_no_warnings \
-      and not TestImputationModel \
-    "
+  _ignored_tests=(
+    # Requires https://github.com/pyro-ppl/numpyro which is not yet pacakged.
+    tests/sampling/test_jax.py
+    tests/sampling/test_mcmc_external.py
+
+    # Requires https://aur.archlinux.org/packages/python-numdifftools which
+    # currently is broken.
+    tests/logprob/test_transform_value.py
+
+    # Error during test collection.
+    tests/backends/test_mcbackend.py
+
+    # Most time-consuming test files, ignore these to make test duration more
+    # reasonable.
+    tests/backends/test_arviz.py
+    tests/distributions/test_continuous.py
+    tests/distributions/test_discrete.py
+    tests/distributions/test_distribution.py
+    tests/distributions/test_mixture.py
+    tests/distributions/test_multivariate.py
+    tests/distributions/test_timeseries.py
+    tests/distributions/test_transform.py
+    tests/distributions/test_truncated.py
+    tests/gp/test_cov.py
+    tests/gp/test_gp.py
+    tests/gp/test_hsgp_approx.py
+    tests/logprob/test_mixture.py
+    tests/logprob/test_tensor.py
+    tests/logprob/test_transforms.py
+    tests/model/test_core.py
+    tests/sampling/test_forward.py
+    tests/sampling/test_mcmc.py
+    tests/sampling/test_parallel.py
+    tests/step_methods/hmc/test_nuts.py
+    tests/step_methods/test_metropolis.py
+    tests/test_func_utils.py
+    tests/test_math.py
+    tests/test_pytensorf.py
+    tests/variational/test_inference.py
+  )
+  _ignored_tests_arg=$(printf " --ignore=%s" "${_ignored_tests[@]}")
+
+  _deselected_tests=(
+    # Fails due to:
+    # DeprecationWarning: np.find_common_type is deprecated.  Please use `np.result_type` or `np.promote_types`.
+    tests/backends/test_arviz.py::TestDataPyMC::test_autodetect_coords_from_model
+
+    # Fails due to:
+    # assert (2, 50) == (2, 50, 20)
+    tests/backends/test_arviz.py::TestDataPyMC::test_multivariate_observations
+
+    # Fails due to:
+    # pymc.logprob.utils.ParameterValueError or AssertionError
+    tests/distributions/test_mixture.py::TestMixtureSameFamily::test_with_multinomial
+    tests/distributions/test_multivariate.py::TestMatchesScipy::test_multinomial
+    tests/distributions/test_multivariate.py::TestMatchesScipy::test_multinomial_invalid_value
+    tests/distributions/test_multivariate.py::TestMatchesScipy::test_multinomial_vectorized
+    tests/distributions/test_multivariate.py::TestMoments::test_multinomial_moment
+
+    # Fails due to:
+    # assert array(nan) >= 0
+    tests/distributions/test_multivariate.py::TestMatchesScipy::test_multinomial_zero_probs
+  )
+  _deselected_tests_arg=$(printf " --deselect=%s" "${_deselected_tests[@]}")
+
+  # shellcheck disable=SC2086
+  pytest \
+    $_ignored_tests_arg \
+    $_deselected_tests_arg
 }
 
 package() {
   cd "$_archive"
 
   python -m installer --destdir="$pkgdir" dist/*.whl
+
   install -Dm644 -t "$pkgdir/usr/share/licenses/$pkgname" LICENSE
 }