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author | Lev Levitsky | 2019-02-19 22:24:49 +0300 |
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committer | Lev Levitsky | 2019-02-19 22:24:49 +0300 |
commit | 5904e2ea902ed1195ee8752c43e9b759d40eaa0b (patch) | |
tree | 24faa1f96f4445f4e7cc3d14f1534fdb7b291416 | |
parent | 1844e351feb5d32a96b3b71a34eb09ff1b35c4c6 (diff) | |
download | aur-5904e2ea902ed1195ee8752c43e9b759d40eaa0b.tar.gz |
Update patch and dependencies
-rw-r--r-- | .SRCINFO | 7 | ||||
-rw-r--r-- | PKGBUILD | 26 | ||||
-rw-r--r-- | percolator.patch | 11 |
3 files changed, 34 insertions, 10 deletions
@@ -1,6 +1,6 @@ pkgbase = percolator-git pkgdesc = Software for postprocessing of shotgun proteomics data + format converters + Elude tool - pkgver = 3.02 + pkgver = 3.02.01.r8.gf97ae1d pkgrel = 1 url = http://percolator.ms/ arch = x86_64 @@ -8,14 +8,15 @@ pkgbase = percolator-git makedepends = git makedepends = xsd makedepends = cmake - makedepends = boost makedepends = zlib depends = xerces-c depends = sqlite + depends = libtirpc-compat + depends = boost source = source::git+https://github.com/percolator/percolator source = percolator.patch md5sums = SKIP - md5sums = 4e1432640f09fa3dc2f3d9894ec380f4 + md5sums = 53c592a9db82da8474907a617ea688fb pkgname = percolator-git pkgdesc = Percolator and qvality, two post processors for shotgun proteomics data. @@ -1,18 +1,18 @@ # Maintainer: Lev Levitsky <levlev@mail.ru> pkgbase="percolator-git" pkgname=('percolator-git' 'percolator-converters-git' 'elude-git') -pkgver=3.02 +pkgver=3.02.01.r8.gf97ae1d pkgrel=1 pkgdesc="Software for postprocessing of shotgun proteomics data + format converters + Elude tool" url="http://percolator.ms/" license=('Apache') -depends=('xerces-c' 'sqlite') +depends=('xerces-c' 'sqlite' 'libtirpc-compat' 'boost') arch=('x86_64') -makedepends=('git' 'xsd' 'cmake' 'boost' 'zlib') +makedepends=('git' 'xsd' 'cmake' 'zlib') source=('source::git+https://github.com/percolator/percolator' 'percolator.patch') md5sums=('SKIP' - '4e1432640f09fa3dc2f3d9894ec380f4') + '53c592a9db82da8474907a617ea688fb') pkgver() { cd "${srcdir}/source" @@ -34,19 +34,31 @@ build() { echo "------------------------" echo "Building percolator ..." echo "------------------------" - cmake -DTARGET_ARCH=amd64 -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/usr -DXML_SUPPORT=ON "${srcdir}/source" + echo "Running cmake for percolator ..." + echo "................................" + cmake -DTARGET_ARCH=x86_64 -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/usr -DXML_SUPPORT=ON "${srcdir}/source" + echo "Running make for percolator ..." + echo "..............................." make echo "------------------------" echo "Building converters ..." echo "------------------------" cd "../${pkgname[1]%-git}" - cmake -DTARGET_ARCH=amd64 -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=Release "${srcdir}/source/src/converters" + echo "Running cmake for percolator-converters ..." + echo "..........................................." + cmake -DTARGET_ARCH=x86_64 -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=Release "${srcdir}/source/src/converters" + echo "Running make for percolator-converters ..." + echo ".........................................." make echo "------------------------" echo "Building Elude ..." echo "------------------------" cd "../${pkgname[2]%-git}" - cmake -DTARGET_ARCH=amd64 -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=Release "${srcdir}/source/src/elude_tool" + echo "Running cmake for elude ..." + echo "..........................." + cmake -DTARGET_ARCH=x86_64 -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=Release "${srcdir}/source/src/elude_tool" + echo "Running make for elude ..." + echo ".........................." make } diff --git a/percolator.patch b/percolator.patch index add4b7ca1acf..22fdc38b4a89 100644 --- a/percolator.patch +++ b/percolator.patch @@ -11,3 +11,14 @@ index 5b4e084..d11970b 100755 PATHS $ENV{XSDDIR}/bin /usr/local/bin +diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt +index 09aa167..80f6105 100755 +--- a/src/CMakeLists.txt ++++ b/src/CMakeLists.txt +@@ -161,4 +161,5 @@ ENDIF(CRUX) + ############################################################################### + + add_subdirectory(qvality) +- ++include_directories(/usr/include/rpc) ++target_link_libraries(percolator tirpc) |