v1.8.2

2 files changed, 25 insertions, 19 deletions

diff --git a/.SRCINFO b/.SRCINFO
index acb355e0b3e2..3d411c2f29a8 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,13 +1,11 @@
 pkgbase = scanpy
 	pkgdesc = Single-Cell Analysis in Python
-	pkgver = 1.7.2
+	pkgver = 1.8.2
 	pkgrel = 1
 	url = https://github.com/theislab/scanpy
 	arch = any
 	license = BSD
 	makedepends = install-wheel-scripts
-	makedepends = python-setuptools-scm
-	makedepends = python-pytoml
 	depends = python-anndata>=0.7.4
 	depends = python-numpy>=1.17.0
 	depends = python-matplotlib>=3.1.2
@@ -24,18 +22,22 @@ pkgbase = scanpy
 	depends = python-natsort
 	depends = python-joblib
 	depends = python-numba>=0.41.0
-	depends = python-umap-learn>=0.3.0
-	depends = python-legacy-api-wrap
+	depends = python-umap-learn>=0.3.10
 	depends = python-packaging
 	depends = python-sinfo
-	optdepends = python-bbknn: Batch balanced KNN (batch correction)
-	optdepends = python-leidenalg: leiden community detection
-	optdepends = python-multicoretsne: Fast t-SNE
 	optdepends = python-louvain-igraph: Louvain clustering
+	optdepends = python-leidenalg: leiden community detection
+	optdepends = python-bbknn: Batch balanced KNN (batch correction)
+	optdepends = python-rapids: GPU-driven calculation of neighbors
+	optdepends = python-magic-impute: MAGIC imputation method
+	optdepends = python-skmisc: For seurat_v3 highly_variable_genes method
+	optdepends = python-harmonypy: Harmony dataset integration algorithm
+	optdepends = python-scanorama: Scanorama dataset integration algorithm
+	optdepends = python-scrublet: Cell doublet detection
 	provides = scanpy
 	provides = python-scanpy
-	noextract = scanpy-1.7.2-py3-none-any.whl
-	source = https://files.pythonhosted.org/packages/py3/s/scanpy/scanpy-1.7.2-py3-none-any.whl
-	sha256sums = 68912549d9108d8f22fddada9f5deb51b5ec4637420fb80b9e15341bf03db650
+	noextract = scanpy-1.8.2-py3-none-any.whl
+	source = https://files.pythonhosted.org/packages/py3/s/scanpy/scanpy-1.8.2-py3-none-any.whl
+	sha256sums = f8c8a07c2bce9923840a215a817d4a293e5a052791ffd2850f5f0b7cb33e21d0
 
 pkgname = scanpy
diff --git a/PKGBUILD b/PKGBUILD
index f8a80e0a0ec3..7c05fcc0c07c 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,7 +1,7 @@
 # Maintainer: Philipp A. <flying-sheep@web.de>
 
 pkgname=scanpy
-pkgver=1.7.2
+pkgver=1.8.2
 pkgrel=1
 pkgdesc='Single-Cell Analysis in Python'
 arch=(any)
@@ -25,21 +25,25 @@ depends=(
 	python-natsort
 	python-joblib
 	'python-numba>=0.41.0'
-	'python-umap-learn>=0.3.0'
-	python-legacy-api-wrap
+	'python-umap-learn>=0.3.10'
 	python-packaging
 	python-sinfo
 )
 optdepends=(
-	'python-bbknn: Batch balanced KNN (batch correction)'
-	'python-leidenalg: leiden community detection'
-	'python-multicoretsne: Fast t-SNE'
 	'python-louvain-igraph: Louvain clustering'
+	'python-leidenalg: leiden community detection'
+	'python-bbknn: Batch balanced KNN (batch correction)'
+	'python-rapids: GPU-driven calculation of neighbors'
+	'python-magic-impute: MAGIC imputation method'
+	'python-skmisc: For seurat_v3 highly_variable_genes method'
+	'python-harmonypy: Harmony dataset integration algorithm'
+	'python-scanorama: Scanorama dataset integration algorithm'
+	'python-scrublet: Cell doublet detection'
 )
-makedepends=(install-wheel-scripts python-setuptools-scm python-pytoml)
+makedepends=(install-wheel-scripts)
 _wheel="$pkgname-$pkgver-py3-none-any.whl"
 source=("https://files.pythonhosted.org/packages/py3/${pkgname::1}/$pkgname/$_wheel")
-sha256sums=('68912549d9108d8f22fddada9f5deb51b5ec4637420fb80b9e15341bf03db650')
+sha256sums=('f8c8a07c2bce9923840a215a817d4a293e5a052791ffd2850f5f0b7cb33e21d0')
 noextract=("$_wheel")
 
 package() {